Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq326 176 1e-38 seq26 150 4e-31 seq433 111 4e-19 seq752 107 4e-18 >seq326 Length=20000 Score = 176 bits (194), Expect = 1e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||||||||| || || ||||| || || || || ||||| | |||||| Sbjct 12773 AGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCT 12832 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || || |||||||||| |||||||| ||| Sbjct 12833 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 12892 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || || ||||||||||| ||| || ||||| || ||||| ||| Sbjct 12893 TGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 12952 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 ||||| || | |||||| |||| Sbjct 12953 TTTCCAGTCAAAGTCTTGACAA 12974 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| || || ||||| || | || || Sbjct 13074 AGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCC 13133 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| || || | ||| ||||| ||| Sbjct 13134 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC 13193 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || ||||| ||||| || ||||||||||| || ||| Sbjct 13194 TGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTC 13253 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTACTT 211127 || || ||||| ||||| || || | ||| |||||||||| Sbjct 13254 TTGCCGGTGAGGGTCTTGACGAAGATTTGC-----ATGGTTACTT 13293 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || ||||| ||||| || || ||||| || || || | || | ||||| Sbjct 12545 AGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCCATCC 12604 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || |||||||| |||| ||||||||||| Sbjct 12605 TCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 12664 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| || || || ||| || || | ||||| ||| Sbjct 12665 TGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTC 12724 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | |||||| Sbjct 12725 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 >seq26 Length=47302 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCA-AGGGTCCTTCCATCTTCCAGCTG 210970 || || ||| ||| || |||||||| || || ||| ||||| | ||||| || ||||| Sbjct 11994 TGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GCACAGGGTGCGGCCATCCTCGAGCTG 12052 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || |||||||| ||||| ||||| || |||| || ||||||||||||||||| Sbjct 12053 CTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 12112 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||||||||| || || ||||| || ||||| ||||| ||||| Sbjct 12113 GGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGT 12172 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || || | |||||| || Sbjct 12173 GAGGGTTTTGACGAAAATCTGCATCTT 12199 >seq433 Length=16792 Score = 111 bits (122), Expect = 4e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCA-AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 || || ||||| || || ||| ||||| | || || || ||||||||||| ||||| || Sbjct 4879 TTCTGAATGTTGTAGTC-GCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAAT 4937 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | || || |||||||| |||| || |||||||| ||||| || || || || || Sbjct 4938 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTC 4997 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 4998 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 5057 >seq752 Length=11106 Score = 107 bits (118), Expect = 4e-18 Identities = 188/270 (70%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||| ||||||||||||||| |||||| |||||| || ||||| Sbjct 4761 TTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGT 4820 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | ||| || | || | | |||| ||| | ||| |||| |||||| || | ||||| Sbjct 4821 TGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCT 4880 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | | || ||| ||| ||||||| |||||| |||| |||||| |||||| Sbjct 4881 TGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGC 4940 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC 178324 |||| | || || || ||| ||||| || | ||| |||| | ||| |||| ||| Sbjct 4941 AATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTT--TTC 4998 Query 178325 -ACTCGTTTCATGAAGAGGTCAGAGGTCCA 178353 || || ||||||||||| || | | |||| Sbjct 4999 GACGCGCTTCATGAAGAGATCTGGGATCCA 5028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158610464832995