Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq326 82.4 7e-11 >seq326 Length=20000 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || ||||| || || |||| |||||||| || || || || Sbjct 13094 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAA 13153 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||||| ||| | | ||| || ||| || ||| |||| | Sbjct 13154 GATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACTTGACATT 13213 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| |||||| || || | || || | || || || || || || || Sbjct 13214 GTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 13273 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| |||| Sbjct 13274 GAAGATTTGCATGGTTAC 13291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429354713022719