Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq326 165 2e-35 seq26 131 4e-25 seq433 113 1e-19 >seq326 Length=20000 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | || ||||| || || || || | ||||| |||||||||||| Sbjct 12536 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTT 12595 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 12596 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCT 12655 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| ||| ||||| || || || | ||| || || || Sbjct 12656 TCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAAT 12715 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||||||| || | ||| | ||||| Sbjct 12716 GTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||||||||| || |||| |||||| ||||| | || | |||||| Sbjct 12773 AGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCT 12832 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | ||| || || || || |||||||||||||| || Sbjct 12833 TCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC 12892 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 12893 TGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 12952 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || |||||||| || Sbjct 12953 TTTCCAGTCAAAGTCTT 12969 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 225522 TTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAA 225581 ||| || |||| ||||| ||| || || | || |||||||||||||| || || || Sbjct 12337 TTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAA 12396 Query 225582 GATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGC 225641 ||||||||||| |||||||| || || || ||||| || || ||||| || |||| Sbjct 12397 AATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTGACAGT 12456 Query 225642 TTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTAT 225701 |||||||| || | | ||| || || || ||||| ||||| || ||||| || || | Sbjct 12457 GTCGATGGTATCAGCAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGAC 12516 Query 225702 GAACACTTGCAT 225713 || | |||||| Sbjct 12517 AAAAATTTGCAT 12528 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| || || | ||| | || || Sbjct 13074 AGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCGTCC 13133 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || |||||||| || || || ||||| || Sbjct 13134 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC 13193 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||| || || | || || || | || || ||| Sbjct 13194 TGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTC 13253 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTACTT 225726 ||||| || | || || | ||| | |||| |||||||||| Sbjct 13254 TTGCCGGTGAGGGTCTTGACGAAGATTTGC-----ATGGTTACTT 13293 >seq26 Length=47302 Score = 131 bits (144), Expect = 4e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || || ||| || || |||| ||||| ||| || || Sbjct 11975 ACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCACAGGGT 12034 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| || Sbjct 12035 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 12094 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 12095 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 12154 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | ||||| | ||| | ||||| || Sbjct 12155 GGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 12199 >seq433 Length=16792 Score = 113 bits (124), Expect = 1e-19 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| ||| || |||| || || || |||||||| |||||||| || | ||| || Sbjct 4888 TTGTAGTCGCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGC 4947 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||||||||| || ||| ||| ||||| ||||| Sbjct 4948 TGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTCGATCGTGTCC 5007 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 5008 GAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191974070665322