Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq31 118 9e-22 >seq31 Length=45476 Score = 118 bits (130), Expect = 9e-22 Identities = 338/510 (66%), Gaps = 20/510 (4%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||||||| |||||||| || || ||||| | || ||||| ||| Sbjct 40087 TTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTT 40028 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||| || || || | | ||||| ||||| ||||| || | Sbjct 40027 TCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAAT 39968 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 | || || || |||||||| ||||| || |||| ||| | ||| || || | | | Sbjct 39967 AGGCGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA 39908 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || || || | |||||||||||||| || || || || || ||||| || Sbjct 39907 GCACAC-GGAAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAAT 39849 Query 4496 ATCTTTTATTTTATCTT--TAGATGGTTTATTTACTAAGTATCCAA--ACAATAAACACG 4551 ||| | | || ||| | | ||| | | | || || | | ||| | ||| | Sbjct 39848 ATCCTGGA---TAACTTGCTTGCTGGCTCGGTGCTTGAG-ATGCGAGTGCAACAGACAGG 39793 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||| || |||||||| || || | | || ||||||||||| || || | || | Sbjct 39792 CAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACCTG 39733 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | ||| | ||| || ||||| || || | |||||| | || ||||| |||| Sbjct 39732 GCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGC 39673 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCG--GGACCCGAACGAGCTGG---CTTTGTCTTT 4726 | || || || || || || || || || || | || |||||| | ||||| | Sbjct 39672 CCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGC---AA--AGCTGGAATCCTTGTCCTG 39618 Query 4727 AATCCATTTTAATGCCCAGTTAGCtttttt 4756 |||||| | ||||||| |||||||| Sbjct 39617 AATCCAACGAATGGCCCAGTCTGCTTTTTT 39588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426859822227179