Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq752 208 1e-48 >seq752 Length=11106 Score = 208 bits (230), Expect = 1e-48 Identities = 739/1149 (64%), Gaps = 22/1149 (2%) Strand=Plus/Plus Query 76087 AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 || ||| || || || || |||||||| |||| ||| || |||| ||||| | | ||| Sbjct 4483 AAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCT 4542 Query 76147 AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 76206 | ||| || ||| ||||||| || | || || || || ||||| || | ||| Sbjct 4543 GTTGCGAGCCTCCTCAATGGGGTAATGGTTGACGTCAATGATCTTGTTGAGGTTACGGAC 4602 Query 76207 AACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC------AC 76260 || |||| | || || | || || | || || | || ||| | || Sbjct 4603 GACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGAC 4662 Query 76261 AAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA-- 76318 || | || || | ||| || | || ||||| || ||||||| || |||| Sbjct 4663 GAAGGCAGGCAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGG---GGCACA 4719 Query 76319 -TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTT 76377 || | || ||||||||||| || || | || ||||| || || | ||||| Sbjct 4720 GTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTT 4779 Query 76378 GCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 ||||||| |||| || | ||||| || || | ||| || | || ||||| |||| || Sbjct 4780 GCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCTGGGA 4839 Query 76438 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTC 76494 |||| || || | ||||| | ||| | | |||| ||| | | ||| Sbjct 4840 CTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCACGGCCCTC 4896 Query 76495 TCTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 | ||||| | | ||| | | || |||||||| || || | |||| ||| ||| Sbjct 4897 ACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCCTCGCCATAGCAATCAGCCAGGCCA 4954 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || || || || |||||||| | | ||| || || | | | || || ||||| ||| Sbjct 4955 GGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAG 5014 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 ||||| || ||||| ||||||| || || || || | | | |||||| || || Sbjct 5015 AGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCGTGG 5074 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 |||||| | ||| || || || | | || | ||||| || || || || || || Sbjct 5075 TTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCA 5134 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | |||| ||||| || ||||| ||||| || | |||||||||||||| || | || Sbjct 5135 AATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 5194 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 | | ||| ||||| |||||||| |||||||| || || || | ||| ||| || Sbjct 5195 CGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCGGTA 5254 Query 76853 GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAG 76912 ||||| || | | ||| ||||| || ||||| || ||||| | |||||| Sbjct 5255 GCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATCATGGCACAG 5314 Query 76913 CGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAG 76972 || | ||||| |||||||| || || || || ||| |||||| | || |||||| Sbjct 5315 GTCTTGAGAGTGTCGTAGATGCCATCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAG 5374 Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||| ||| || || || || || || | |||||| || || || ||||| Sbjct 5375 GAAGACAGCTGACACTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 5434 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || || | || | ||| || || | ||| || |||| | ||| Sbjct 5435 AGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCTCCCCAAATA 5494 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 || || || || ||||| | ||| ||||| ||||| || ||| |||| || | ||| Sbjct 5495 CCGACCGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCGTTGAGTTTG 5554 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 | | |||||| | |||| ||| || || ||||| || | || |||||||| ||| Sbjct 5555 AGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTCTCTGTCG 5614 Query 77213 TAAATAATA 77221 || | |||| Sbjct 5615 TAGACAATA 5623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712609453412160