Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq20645 98.7 1e-15 >seq20645 Length=266 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 132825 ACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAATA-CTGTTACTTG 132883 |||||||||||| || |||||||| || | ||| | || || | ||| || | | || Sbjct 34 ACCGGCGTTGATACCGATACCAGCGCGTTGGCTCACGTATTTTACGATAGATGATGC-TG 92 Query 132884 CCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGAACTAAATTGAC 132943 ||| || || |||| || ||||||| ||| || | ||| || || ||||| |||| Sbjct 93 TCGCGTTGATGGAATCCAAGCTATCGCCACATTCAATCAGTACGCATGAGCTAAACTGAC 152 Query 132944 GAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCTGTCGAGTAGATA 133003 |||| || ||||| | |||||||| || || || || | |||||||| ||| |||| Sbjct 153 GAGTCGGCGTACGCACTCCCGCCATGATAGGCGTTGGCAGTGAAATCTTAAAAGTCGATA 212 Query 133004 CAGCATCATAAAA 133016 | || || ||||| Sbjct 213 CCGCGTCGTAAAA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511248473080240