Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq20111 141 6e-29 >seq20111 Length=272 Score = 141 bits (156), Expect = 6e-29 Identities = 196/269 (73%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 59566 CAGCTTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGGTTGAT 59625 ||||||||||||||||| || |||| ||||| |||||||||| || || | |||||| Sbjct 269 CAGCTTGGCGTAGGTCACACCAGGGCAGGACTCAGCCATCTTGGAGAGGCCCAAGTTGAT 210 Query 59626 CGCATCACCGAGGATTGCGGACAGCAGCAACGTCCTG-TCTTTGGCCTCGGCCCCGTCCT 59684 ||||| | ||||| | | ||||| || || ||| |||| |||| || ||| || Sbjct 209 GGCATCGGCAAGGATGGTCGTCAGCAACAG-GTGCTGGTCTTCGGCCGTCGCGCCGCTCT 151 Query 59685 TCAAGTGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTCGG 59744 | | ||| ||||||||||||| ||||| ||||| | || || |||| |||||| |||| Sbjct 150 TGAGGTGCTTGAAGTGGCGGCTAAAGCCGCTCCAGCCATCGACTTCCAGCAGCAGCTCGG 91 Query 59745 TGATCTTGATGCGCGGCAG-TAACTGGCTGGTTTGGTCGATCAGCGCCTGCGCCCGATCC 59803 ||||||| | | ||||||| | ||| | | || | ||| ||| | ||| |||| Sbjct 90 TGATCTTCAGGTGCGGCAGCCAGCTGTAT-GCCTGCTGCCTCAACGCTTTGGCCTCATCC 32 Query 59804 GGCACCGCCGCATCCAGCGGGGTGATTTT 59832 ||||| || |||||||| || || || Sbjct 31 GGCACGGCATTGTCCAGCGGCGTAATCTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330752150773858