Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15]
36,463 sequences; 36,098,533 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq20111 141 6e-29
>seq20111
Length=272
Score = 141 bits (156), Expect = 6e-29
Identities = 196/269 (73%), Gaps = 4/269 (1%)
Strand=Plus/Minus
Query 59566 CAGCTTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGGTTGAT 59625
||||||||||||||||| || |||| ||||| |||||||||| || || | ||||||
Sbjct 269 CAGCTTGGCGTAGGTCACACCAGGGCAGGACTCAGCCATCTTGGAGAGGCCCAAGTTGAT 210
Query 59626 CGCATCACCGAGGATTGCGGACAGCAGCAACGTCCTG-TCTTTGGCCTCGGCCCCGTCCT 59684
||||| | ||||| | | ||||| || || ||| |||| |||| || ||| ||
Sbjct 209 GGCATCGGCAAGGATGGTCGTCAGCAACAG-GTGCTGGTCTTCGGCCGTCGCGCCGCTCT 151
Query 59685 TCAAGTGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTCGG 59744
| | ||| ||||||||||||| ||||| ||||| | || || |||| |||||| ||||
Sbjct 150 TGAGGTGCTTGAAGTGGCGGCTAAAGCCGCTCCAGCCATCGACTTCCAGCAGCAGCTCGG 91
Query 59745 TGATCTTGATGCGCGGCAG-TAACTGGCTGGTTTGGTCGATCAGCGCCTGCGCCCGATCC 59803
||||||| | | ||||||| | ||| | | || | ||| ||| | ||| ||||
Sbjct 90 TGATCTTCAGGTGCGGCAGCCAGCTGTAT-GCCTGCTGCCTCAACGCTTTGGCCTCATCC 32
Query 59804 GGCACCGCCGCATCCAGCGGGGTGATTTT 59832
||||| || |||||||| || || ||
Sbjct 31 GGCACGGCATTGTCCAGCGGCGTAATCTT 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330752150773858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |