Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq326 132 1e-25 seq26 91.5 3e-13 >seq326 Length=20000 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || ||||| || ||||| || ||||||||||| || || | ||| | Sbjct 13067 GAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCG 13126 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || |||||||| || | ||||||||| | | |||||| Sbjct 13127 ACCGTCCTCAAGCTGCTTT--CCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCC 13184 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || |||||| | || | | | || || ||| || || ||| Sbjct 13185 TCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGA 13244 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||| ||||| ||||||| ||||| Sbjct 13245 GTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| ||||||||||| || || |||||||| ||||| ||||||| ||||| Sbjct 12545 AGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTTCGGCCATCC 12604 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | || |||||||| ||| Sbjct 12605 TCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 12664 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | || ||| || ||||| | || ||||| Sbjct 12665 TGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTC 12724 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| |||||| Sbjct 12725 TTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | |||| || || ||||||||||| ||| | || | || ||| Sbjct 12317 AGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCT 12376 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||||| ||||| || ||||| | |||||||| | | |||||| ||||| | Sbjct 12377 TCTAGCTGCTTT--CCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTAT 12434 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || ||||||||| || | | | || | | || ||||| | || |||| Sbjct 12435 CCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGACTTCCAAGGTGATAG 12494 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||| || || | ||||| Sbjct 12495 TCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 >seq26 Length=47302 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| ||| | || | ||||| || || || || || || Sbjct 12005 CTCCTTCTGGATGTTGTAGTCGCACAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 12064 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 |||||| | |||||||||| | || || ||||| || || || || ||||| | Sbjct 12065 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 12124 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | |||| ||| ||| || ||||| || ||||| || |||||||| || || || Sbjct 12125 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGAC 12184 Query 152093 GAAGACCTGCATTTTACC 152110 ||| | |||||| || || Sbjct 12185 GAAAATCTGCATCTTGCC 12202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153281755474673