Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq26 187 5e-42 seq326 181 2e-40 seq433 138 2e-27 seq31 91.5 3e-13 >seq26 Length=47302 Score = 187 bits (206), Expect = 5e-42 Identities = 182/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||||||| || |||| ||| | ||||| || || |||||||||||||| || Sbjct 11969 ACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 12027 Query 282932 A-AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | || |||||||||||||| || || || || |||||||| | ||||| ||||| | Sbjct 12028 ACAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGG 12087 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || | Sbjct 12088 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCA 12147 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | || || ||||| ||||| ||||| | || || ||||| |||||||| || Sbjct 12148 CCTCAAGGGTGATAGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 12199 >seq326 Length=20000 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || |||| ||| | || || || || ||||||||||| || Sbjct 12529 ACCACCCCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGC 12588 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||||||||| || || || || |||||||| | || || |||||| || Sbjct 12589 CAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 12648 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| || ||||| ||||||| || ||||||| |||||| Sbjct 12649 AATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGAC 12708 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 12709 TTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 12756 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| || ||||| || || ||||| || |||||||||||||| Sbjct 12301 ACCACCACGCAGACGAAGCACGAGATGCAAAGTACTTTCCTTCTGGATGTTGTAGTCGCT 12360 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || ||||| || || |||||||| || | ||||| ||||| || Sbjct 12361 CAGCGTGCGGCCGTCTTCTAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 12420 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | ||| || || ||||| || || | || |||||| Sbjct 12421 GATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGCAGATTCGAC 12480 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 12481 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 12528 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| ||||| || || | ||| ||| || ||||| |||||||| || Sbjct 12757 ACCACCACGGAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGC 12816 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || || || || || |||||||| || || || ||| || Sbjct 12817 GAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGG 12876 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| || || ||||| | ||| || | ||||| ||||| || | ||||| Sbjct 12877 AATACCTTCCTTATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGAC 12936 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| ||||| || ||||||||||| || Sbjct 12937 CTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 12972 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | || || || |||||||||||||||||| Sbjct 13059 CCACCTCGGAGGCGGAGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 13118 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || ||||||| ||| || ||||| || Sbjct 13119 AGAGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGG 13178 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| | || || | || || || || || | ||||| Sbjct 13179 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACC 13238 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 13239 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 13285 >seq433 Length=16792 Score = 138 bits (152), Expect = 2e-27 Identities = 140/180 (78%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCA-AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGAT 282970 || || ||||||||||| ||| || || || || ||||| || || || || || || || Sbjct 4879 TTCTGAATGTTGTAGTC-GCACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAAT 4937 Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 ||| || || |||||| ||||| ||||||||||||||||| || || || || | || Sbjct 4938 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTC 4997 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||| |||||||| | ||||| || || ||||| ||||| ||||||| ||||||||||| Sbjct 4998 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 5057 >seq31 Length=45476 Score = 91.5 bits (100), Expect = 3e-13 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 230167 TCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTG--CGACGCTATTCCTTGCCGTCT 230224 |||| || | |||| | ||| | ||||| |||| ||| ||| |||| || ||| Sbjct 39853 TCACCGACGCTGTTGGCATTGAGCAAGAGTT--TTTGACCGAGGCTCTTCCGTGTGCTCT 39910 Query 230225 TATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTT 230284 | |||||||| || || ||| ||||||||| ||||| || || ||||| | || Sbjct 39911 CCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATT 39970 Query 230285 CGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCT 230344 || || || || |||| || || || || || |||||||||| ||| ||||| Sbjct 39971 GGTTGCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAA 40030 Query 230345 CATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400 |||||| | || || || ||||||||||| ||||| || | || ||||||| Sbjct 40031 CATTTCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAA 40086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046250182090802