Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq21001 181 1e-40 seq20708 93.3 4e-14 >seq21001 Length=262 Score = 181 bits (200), Expect = 1e-40 Identities = 142/167 (85%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 8442 GAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTA-GTA 8500 |||||||||||| |||||||| | ||||||| ||| |||| || ||||||||| ||| Sbjct 259 GAGTAGCTGGGAATACAGGCACATGCCACCATGCCCAGCTGATCGCTGTATTTTTTTGTA 200 Query 8501 GAGA-GAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCC 8559 |||| | |||||| |||||||| ||||||||||| ||||||||| |||| ||||||| Sbjct 199 GAGATGGGGGTTTTGCCATGTTGTTCAGGCTGGTCTTGAACTCCTGGGCTCAGGTGATCC 140 Query 8560 ACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 8606 | |||||| |||||||||||||| ||||||||||||| ||||||||| Sbjct 139 ATCTGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACC 93 >seq20708 Length=265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 8358 CCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAA 8417 |||||||||| || |||||| || |||| ||||||||||||||| |||||| | |||||| Sbjct 79 CCAGGCTGGAATGTAGTGGCATGTTCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAA 20 Query 8418 GCTATTCTCCTGCCTCAGC 8436 |||||||||||||||| Sbjct 19 ATGATTCTCCTGCCTCAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521250312288200