Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sylvatica_20[genbank_20GCA_5F001008265.1_202015-05-15] 36,463 sequences; 36,098,533 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq26 156 1e-32 seq326 149 2e-30 >seq26 Length=47302 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || || || |||||||| |||||||| || ||| Sbjct 12193 CAGATTTTCGTCAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 12134 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || |||||||||||| Sbjct 12133 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAA 12074 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 12073 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGTGCGACTACAACATC 12014 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || |||||| Sbjct 12013 CAGAAGGAGAGCACCCTGCAT 11993 >seq326 Length=20000 Score = 149 bits (164), Expect = 2e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || ||| | || ||||| || |||||||| ||||| || ||| ||||||||||| Sbjct 12972 GTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGAC 12913 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || |||||| ||||||||||| || ||||| || ||||| || ||||| ||| | ||| Sbjct 12912 AATGTCAAATCGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATC 12853 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||| || || ||||| |||||||| | || || ||||| || || |||| || ||| Sbjct 12852 TTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAA 12793 Query 178113 TCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 12792 TCCACTCTTCACCTTGT 12776 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || || |||||||| || || || Sbjct 13282 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCTGAT 13223 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||||||||| || || |||||||| || |||||||| Sbjct 13222 ACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCCCCCGACCAGCAG 13163 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| || || || | |||||||| || || ||| || Sbjct 13162 CGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGCACTCTTGCTGACTACAACATC 13103 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || || || Sbjct 13102 CAGAAGGAGTCAACCCTTCACCTCGT 13077 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || ||||| || |||||| | || || ||| | || Sbjct 12525 CAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTGCTGAT 12466 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | |||||| ||||||||||| || || ||||||||||| ||||||||| Sbjct 12465 ACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAGCAA 12406 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||| || |||||||| ||||| ||||| || | || || ||| || ||| || Sbjct 12405 CGACTTATTTTTGCCGGAAAGCAGCTAGAAGACGGCCGCACGCTGAGCGACTACAACATC 12346 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||| || ||||||| || Sbjct 12345 CAGAAGGAAAGTACTTTGCATCTCGT 12320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203168838224822