Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14377 102 2e-16 seq539 102 2e-16 seq15 96.9 7e-15 >seq14377 Length=266 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| ||| ||| || ||||| ||||| || ||||| ||| | || ||| Sbjct 60 GGCATGAACGCCACACTAATGAAGCAATACATTGAATTTGTCGCCGATCGCCTATTGGTT 119 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || |||||| |||| || || ||||| | |||||||| | || ||||| |||| Sbjct 120 GCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATT 179 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||| ||||||||||| ||||| || | || ||||| | | |||| Sbjct 180 TCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAAAGGCTGGC 239 Query 230632 GTGATG 230637 || ||| Sbjct 240 GTCATG 245 >seq539 Length=27760 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| ||| ||| || ||||| ||||| || ||||| ||| | || ||| Sbjct 8344 GGCATGAACGCCACACTAATGAAGCAATACATTGAATTTGTCGCCGATCGCCTATTGGTT 8403 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || |||||| |||| || || ||||| | |||||||| | || ||||| |||| Sbjct 8404 GCTCTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATT 8463 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||| ||||||||||| ||||| || | || ||||| | | |||| Sbjct 8464 TCCTTGGGTGGCAAGACAAACTTCTTCGAGAAGCGAGTTGGAGAATATCAAAAGGCTGGC 8523 Query 230632 GTGATG 230637 || ||| Sbjct 8524 GTCATG 8529 >seq15 Length=125974 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| ||| ||| || || || ||||| || ||||| || | || ||| Sbjct 19074 GGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGGTT 19015 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 ||||||||| |||| || || ||||| | |||||||| | || |||||| |||| Sbjct 19014 GCACTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATT 18955 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || | || ||||| ||||| ||||| ||||| || | || ||||| | | |||| Sbjct 18954 TCCTTGGGTGGCAAGACAAACTTTTTCGAGAAGCGAGTTGGAGAATATCAAAAGGCTGGC 18895 Query 230632 GTGATG 230637 || ||| Sbjct 18894 GTTATG 18889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057510890046260