Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq15 131 2e-25 seq539 113 5e-20 >seq15 Length=125974 Score = 131 bits (144), Expect = 2e-25 Identities = 321/480 (67%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| || || ||||||||||| || ||||| | | || || |||| Sbjct 18903 TTTGATATTCTCCAACTCGCTTCTCGAAAAAGTTTGTCTTGCCACCCAAGGAAATGTTCT 18962 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||||||||| || || || | | | ||| || || || ||| | | | || Sbjct 18963 CCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGTGCAACCAATA 19022 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || |||||||| |||||||| ||||| | | |||||| |||| ||| Sbjct 19023 GACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA- 19081 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||| ||||| || |||||||| |||||| || |||| || || | || ||| Sbjct 19082 GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATGATA 19141 Query 16913 --CTAGC-AACTCG-TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | || | | || || | ||||| |||||||| || ||||||||| Sbjct 19142 TCCTGGATAATTTGCTTGCTGGCTCGGTGC----TTAAGATGCGAGTGCAACAGACATGC 19197 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||| || || ||||| || | | ||||||||||||||| || || | ||||| Sbjct 19198 AAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGGCCGGG 19257 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| || |||| || || | || ||||| || || Sbjct 19258 CATCAGACCACGCTTCTTGAGCCAGAAAATCGACGCAAAGGCACCGCTGAAGAAGATGCC 19317 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| || | || || || | || || | |||| | | | || |||| ||||||| Sbjct 19318 CTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCA 19377 >seq539 Length=27760 Score = 113 bits (124), Expect = 5e-20 Identities = 317/480 (66%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| || || ||||| ||||| || ||||| | | || || || | Sbjct 8515 TTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTTT 8456 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||||||||| || || || | | | ||| || || || || | | | || Sbjct 8455 CCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACCAAGAGCAACCAATA 8396 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | ||| || |||||||| || ||||| ||||| | | |||||| |||| ||| Sbjct 8395 GGCGATCGGCGACAAATTCAATGTATTGCTTCATTAGTGTGGCGTTCATGCCTAGGAGA- 8337 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA 16912 | || ||| ||||| || |||||||| |||||| || |||| || || | |||||| Sbjct 8336 GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATA 8277 Query 16913 --CT-AGCAACTCG-TTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 || | |||| | || || | ||||| || ||||| || |||||| || Sbjct 8276 TCCTGAATAACTTGCTTGCTGGCTCGGTGC----TTTAGATGCGAGTGCAACAGACAGGC 8221 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || || || || ||||| || | | ||||||||||||||| || || | || || Sbjct 8220 AAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTAGAGAAGGTGAGACCTGG 8161 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 |||| || || ||||| | ||| || |||| ||| || | || ||||| ||||| Sbjct 8160 CATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATACC 8101 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 ||| || | || || || | || || | |||| | | | || |||| ||||||| Sbjct 8100 CTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCCA 8041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517396145769360