Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15 125 7e-24 seq539 120 3e-22 >seq15 Length=125974 Score = 125 bits (138), Expect = 7e-24 Identities = 196/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||| ||||| | | ||| |||| ||||| || ||||| || ||||| ||||||| Sbjct 19525 TATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCAT 19584 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 ||||||| |||||||||| | || || || || || || || || ||| |||| Sbjct 19585 AGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCAT 19644 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || |||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 19645 TGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGT 19704 Query 16659 CAGATGTAAGA---ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | ||| | | |||||| | || || ||||| | ||| | ||||| | || Sbjct 19705 CGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCG 19764 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || | ||||| |||||||||| |||||| Sbjct 19765 TCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 19804 >seq539 Length=27760 Score = 120 bits (132), Expect = 3e-22 Identities = 195/280 (70%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 16479 TATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCAT 16538 |||| ||||| | | ||| |||| ||||| || || || || ||||| ||||||| Sbjct 7890 TATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTTTCCATCATGATCTGGAATCCAT 7831 Query 16539 AGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCAT 16598 ||||||| |||||||||| | || || || || || || || ||||| |||| Sbjct 7830 AGAAGCAGCGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGAAGGTTTTCAT 7771 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGT 16658 | || || |||||| |||||||| || ||||| ||||| |||||| ||||| |||| Sbjct 7770 TGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAAATGAAGTATTTCTCGT 7711 Query 16659 CAGATGTAAGA---ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 | | ||| | | |||||| | || |||||||| | ||| | ||||| | || Sbjct 7710 CGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCTTTGGACAGATCGATCTCTTCGGCCG 7651 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| || || | ||||| || ||||||| ||| || Sbjct 7650 TCCAGAAAGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 7611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511266716306640