Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq428 129 7e-25 seq132 129 7e-25 >seq428 Length=32488 Score = 129 bits (142), Expect = 7e-25 Identities = 252/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 145866 CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 || ||||||||| || ||| | | ||||||||||||| |||||| | | || ||| Sbjct 12267 CGACACGTAGAATTGCGCAAAT-ACATGGCAGGGCGGCAACGCCATGAGGTGTAGATCCC 12325 Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTA 145984 | |||||| || | | || || || |||| | || || ||||||||| | | Sbjct 12326 GTGCGTTCCACGCACTCATGATGATCCGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAA 12385 Query 145985 TCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACG 146044 ||| ||| |||||||| || |||| || ||| |||||||||| || |||||| Sbjct 12386 TCACGTCGGCAAGCTGGTCGACTCCCTTGCCGGTGTAGTCTGTCTTGGCATCGACGTACT 12445 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 | || || ||||||| ||| ||||| ||||| ||||| ||||| || || || | || Sbjct 12446 CTGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGT 12505 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 | || || | ||||||| || ||||| || ||| ||||||| || ||||||| Sbjct 12506 GTGTGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGC 12565 Query 146165 C--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | | | || ||| || || | ||| ||| ||| ||||||||| || || || | Sbjct 12566 CGGCGTTGCTGAGGGC-CAGT-GAGGAGGTGTTGCCCTCGATGAACCATAGTAGTTCGGC 12623 Query 146223 GAGGAC 146228 || ||| Sbjct 12624 GATGAC 12629 Score = 82.4 bits (90), Expect = 9e-11 Identities = 218/324 (67%), Gaps = 13/324 (4%) Strand=Plus/Plus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 ||| |||| ||||| ||||| ||| | | ||| |||| |||||||| | | | || || Sbjct 11853 TTACACCGACATCTTCATGGCGATAGTCTTGTGCGGGTCGTAGCCCTTGACCACGAAATC 11912 Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGC---CTCAGG--ATCCTGAGCCTGGGA 145650 || | | | | |||||| || || || ||| || || |||| ||| Sbjct 11913 TTCTACTTTCCACCCGTCTATG--CTGCAGCCCTTTTCTCGGGTGATTTCGAGCTCCGGA 11970 Query 145651 AAGGGCCGGGGG-CTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGA 145708 ||| || ||| ||| || ||||||| | | |||| || |||| | ||||| Sbjct 11971 AAGTCACGAGGGTCTCGCT--TCAGCTGCACAATGAGGGCATCTTCGTGATCTGCGTAGA 12028 Query 145709 CGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||||||| |||| ||||||| ||| | | || ||| | | | | | || ||| Sbjct 12029 TGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-TGTGCG 12087 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | ||| | || || || | |||||| || |||||||||||||| ||||| |||||||| Sbjct 12088 ATCATATGTGTGAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCCATGTCG 12147 Query 145828 CCCGAGCGCTGGTACAGCTGGCAG 145851 | || || ||||||| || ||| Sbjct 12148 CATGATCGTTGGTACAATTGACAG 12171 >seq132 Length=56651 Score = 129 bits (142), Expect = 7e-25 Identities = 252/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 145866 CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 || ||||||||| || ||| | | ||||||||||||| ||||||| | | || ||| Sbjct 28778 CGACACGTAGAATTGCGCAAAC-ACATGGCAGGGCGGCAAGGCCATGAGGTGTAGATCCC 28836 Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTA 145984 | |||||| || | | || || || || | | || || ||||||||| | | Sbjct 28837 GTGCGTTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCAA 28896 Query 145985 TCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACG 146044 ||| ||| ||||||||| || |||| || ||| |||||||||| || | |||| Sbjct 28897 TCACGTCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCTGTCTTGGCATCGATGTACT 28956 Query 146045 CGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGT 146104 | || || ||||||| ||| ||||| ||||| ||||| ||||| || || || | || Sbjct 28957 CTGCGCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGT 29016 Query 146105 GCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGC 146164 | || || | ||||||| || ||||| || ||| ||||||| || ||||||| Sbjct 29017 GTGTGAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGC 29076 Query 146165 C--CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTC 146222 | | | || ||| || || | ||| ||| ||| ||||||||| || || || | Sbjct 29077 CGGCGTTGCTGAGGGC-CAGT-GAGGAGGTGTTGCCCTCGATGAACCATAGTAGTTCGGC 29134 Query 146223 GAGGAC 146228 || ||| Sbjct 29135 GATGAC 29140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 145704 GTAGACGTGCGCGTCCCCCAGGACGTGGATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGT 145762 ||||||||||||||| |||| ||||||| ||| | | || ||| | | | | | | Sbjct 28535 GTAGACGTGCGCGTCGCCCATGACGTGGGTGAGGCTGCCGGGGACCAAATCGCACGCA-T 28593 Query 145763 GGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCA 145822 | |||| ||||| || || || | |||||| || |||||||||||||| ||||| |||| Sbjct 28594 GTGCGATCATGTGCGTGAGGAGTGCGTAGCTAGCGATGTTGAAGGGCACGCCCAGGCCCA 28653 Query 145823 TGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||| | || || ||||||| || ||| Sbjct 28654 TGTCGCATGATCGTTGGTACAATTGACAG 28682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589906400572080