Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq633 168 7e-37 seq1283 150 2e-31 seq15 127 2e-24 seq539 123 3e-23 seq86 120 3e-22 seq13 120 3e-22 seq864 114 1e-20 seq39 109 6e-19 >seq633 Length=24846 Score = 168 bits (186), Expect = 7e-37 Identities = 180/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 20152 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 20093 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 20092 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 20034 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||||||| |||| || || || ||||| || || | |||||||| | |||||| Sbjct 20033 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 19974 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||||||| ||| |||||| | ||| ||||| || | ||||| ||| Sbjct 19973 CAACATCCAGAAGGAGAGCACCCTGCATTTGGTGCTGCGCCTGCGTGGCGGTGGC 19919 >seq1283 Length=10397 Score = 150 bits (166), Expect = 2e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || |||||| | || || || | Sbjct 2535 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2594 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 2595 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 2653 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||||||| |||| || || || ||||| || || | |||||| | | |||||| Sbjct 2654 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGAGCGACTA 2713 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| ||| ||||| | ||| ||||| Sbjct 2714 CAACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGC 2753 >seq15 Length=125974 Score = 127 bits (140), Expect = 2e-24 Identities = 232/331 (70%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTT-CGG-GCAGT 117085 ||||| | ||||| ||||||| ||||| || || |||||| ||||||| ||| || | Sbjct 19354 CTTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTT 19295 Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 | || || || || ||||||||||| || || || ||||||||||| || ||| ||| Sbjct 19294 TGCGTCG--ATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAAC 19237 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 || || |||||| | || |||||| |||| || ||||| ||| || || | |||| Sbjct 19236 GAACTTATCTCCCGTGATGAGGGTTTGCACACAGATTTTGCATGTCTGTTGCACTCGCAT 19177 Query 117206 TTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATC 117265 | ||| ||| | ||| | || ||| ||| |||||||||| || | ||| Sbjct 19176 CTTAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGCATT 19117 Query 117266 GAGCAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC 117324 ||||| || | ||||| || |||||| |||| ||| || || | || || | || Sbjct 19116 GAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAA-CGCCACAC 19059 Query 117325 -GATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| |||||| || || || |||||||| Sbjct 19058 TAATGAAGCAATATATTGAATTTGTCGCCGA 19028 Score = 125 bits (138), Expect = 7e-24 Identities = 195/278 (70%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || |||||||| || || |||||||| | ||| ||| | || ||| Sbjct 19804 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 19745 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||| ||| | || ||| |||| ||||| | |||||| Sbjct 19744 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 19685 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || || || || |||||||| ||||| || || || | |||||| Sbjct 19684 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGCGT 19625 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| | ||||| || |||||||| || || |||||| ||| Sbjct 19624 TTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGATG 19565 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGA 116910 ||||| | ||||| |||| || || ||| ||||| Sbjct 19564 GAGAATATTCACTCTGAAACATACTCTCTCCTGATCGA 19527 >seq539 Length=27760 Score = 123 bits (136), Expect = 3e-23 Identities = 230/330 (70%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||| | ||||| ||||||| ||||| || || ||||| ||||||| || || Sbjct 8064 CTTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGTATCTTCTTCAGCGGTGCCTT 8123 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||| | || || ||||||||||| || || || ||||| || || || ||| ||||| Sbjct 8124 TGCCTCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGA 8183 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 || |||||| | || |||||| |||| |||||||||||| || || | |||| | Sbjct 8184 ACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGTCTGTTGCACTCGCATCT 8243 Query 117208 GGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCG 117266 ||| ||| | ||| | | ||| ||| || |||||||||| || | ||| | Sbjct 8244 AAAGCACCGAGCCAGCAAGCAAGTTATTCA-GGATATTATCACCGACGCTGTTGGCATTG 8302 Query 117267 AGCAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC- 117324 |||| || | ||||| || |||||| |||| ||| || || | || || | || Sbjct 8303 AGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGC-TCTCCTAGGCATGAA-CGCCACACT 8360 Query 117325 GATGTCGCAATACATCGAGTTCGTCGCCGA 117354 ||| ||||||||| || || |||||||| Sbjct 8361 AATGAAGCAATACATTGAATTTGTCGCCGA 8390 >seq86 Length=67758 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 45413 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 45472 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | |||||| ||||| | ||||| |||||||| ||| | |||||||| ||| | Sbjct 45473 GACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 45532 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| |||||| Sbjct 45533 ATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 45592 Query 40879 G 40879 | Sbjct 45593 G 45593 >seq13 Length=129688 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||| || |||| ||||| | | Sbjct 71707 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 71648 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| || || ||||| |||||| | |||||| Sbjct 71647 GATACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCCCCCGACCAG 71588 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 71587 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCTGACTACAAC 71528 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 71527 ATCCAGAAGGAGTCAACCCTTCACCTCGT 71499 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || |||||| | || |||||| | | Sbjct 70950 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 70891 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | || |||| || |||| || || ||||| ||||| | |||||| Sbjct 70890 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 70831 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || |||||||| |||| ||||| || | |||||| ||| Sbjct 70830 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTATAAC 70771 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 70770 ATCCAGAAGGA 70760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| |||| ||||| || |||||| | | | | |||| Sbjct 71382 ACTGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAATCG 71323 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| || || || || || || | || ||||| ||| | |||| ||| || || Sbjct 71322 AAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGATCTTCGCTGGTAAG 71263 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| || | || |||||| ||||||||| ||||||||||| |||| || || Sbjct 71262 CAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGGAATCCACTCTTCAC 71203 Query 40894 CTAGT 40898 || || Sbjct 71202 CTTGT 71198 >seq864 Length=18104 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 8314 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 8373 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| ||||| | ||||| |||||||| ||| | || ||||| ||| | Sbjct 8374 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGATCAGCAGCGATTG 8433 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| || ||||| |||||||||||| |||||| Sbjct 8434 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 8493 Query 40879 G 40879 | Sbjct 8494 G 8494 >seq39 Length=88371 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || || || ||| | || |||||| | | Sbjct 30762 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 30703 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| || || ||||| ||||| | |||||| Sbjct 30702 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 30643 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || |||||||| |||| ||||| || | |||||||||| Sbjct 30642 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 30583 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| ||| ||||||| ||| Sbjct 30582 ATCCAGAAGGAAAGCACTTTGCATCTCGTG 30553 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| || | || || || | || || || ||||||||| | || ||||| || || Sbjct 31217 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 31159 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| || || ||||| ||||| | || ||| Sbjct 31158 GACACCATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAG 31099 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || || |||||||| || | || |||||| ||||||||| Sbjct 31098 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 31039 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| |||| || || || || Sbjct 31038 ATCCAGAAGGAATCCACCCTTCACCTCGT 31010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515070417575520