Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1283 123 2e-23 seq633 118 9e-22 seq864 116 3e-21 seq13 116 3e-21 seq39 114 1e-20 seq86 104 2e-17 seq248 89.7 4e-13 seq15 82.4 7e-11 >seq1283 Length=10397 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||| || || |||||||| ||||||| ||||| ||| Sbjct 2750 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATC 2691 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| |||| || || ||||| || || || |||||||||||||| Sbjct 2690 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2631 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | ||| Sbjct 2630 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 2571 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||||||||| Sbjct 2570 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 2538 >seq633 Length=24846 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || |||||| || | || ||| || || |||||||| ||||||| ||||| ||| Sbjct 19937 CAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 19996 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || ||||| |||| || || ||||| || || || |||||||||||||| Sbjct 19997 CTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTC 20056 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | ||| Sbjct 20057 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 20116 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||||||||| Sbjct 20117 CTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 20149 >seq864 Length=18104 Score = 116 bits (128), Expect = 3e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || ||||| ||||| || |||||| |||| Sbjct 8492 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 8433 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | ||||||||||| || || ||||||||||||||| ||||| || || | ||| Sbjct 8432 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 8373 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || ||||| |||||||| || || ||| Sbjct 8372 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 8313 Query 118731 ATCTGCATGGCTTATT 118746 ||| |||| |||| Sbjct 8312 --CTGAATGGTGTATT 8299 >seq13 Length=129688 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| || ||||| ||||| ||| || ||| || ||||||| Sbjct 70970 ACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 71029 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| || || || ||||| ||||||||| | Sbjct 71030 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 71089 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| ||||| || | || | || ||| Sbjct 71090 ATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTG 71149 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || || || |||||||| Sbjct 71150 CCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | |||||| ||||| ||||| |||||| Sbjct 71511 GTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCA 71570 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||||||||| ||||| || || |||||||| || ||| || || Sbjct 71571 GCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCCTGAATCTTCGACTTG 71630 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||||||||||| || | || |||||||| || || Sbjct 71631 ACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 71690 Query 118722 TTTACAAAAATCTGCATGGCTTATTCTAT 118750 || || || || |||||| || ||| || Sbjct 71691 TTGACGAAGATTTGCATGATTTCTTCGAT 71719 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 71210 GTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCCAGCTGCTTACCA 71269 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| ||||| || || ||||| || ||| || ||| Sbjct 71270 GCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTCGATTTG 71329 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||||| ||| | || || || |||| ||| Sbjct 71330 ACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTC 71389 Query 118722 TTTACAA 118728 || |||| Sbjct 71390 TTGACAA 71396 >seq39 Length=88371 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| ||||| || |||||||||||||| | |||||| ||||||||||| Sbjct 31316 GTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTG 31375 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| ||||||||||| || || || || || |||||||| ||| || Sbjct 31376 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTT 31435 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | || || | ||||||||||| || | || |||||||| Sbjct 31436 CGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 31495 Query 118715 CAGAGTTTTTACAAAAATCTGCATGG 118740 || || || || || || ||||||| Sbjct 31496 GAGGGTCTTGACGAAGATTTGCATGG 31521 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||| ||||| ||| || ||| || |||||||||||| || ||| Sbjct 30794 GTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCA 30853 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| |||||||| || || || ||||| ||||| ||| ||| || || Sbjct 30854 GCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTT 30913 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || |||| | || || || | || | || ||||| |||| ||| Sbjct 30914 ACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGTC 30973 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 30974 TTGACGAAGATCTGCAT 30990 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 31022 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 31081 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||||||||| ||||| || |||||||| || ||| || || Sbjct 31082 GCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 31141 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||| | ||| | || || ||||||| ||| Sbjct 31142 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 31201 Query 118722 TTTACAAAAATCTGCAT 118738 || |||| || ||||| Sbjct 31202 TTGACAACTAT-TGCAT 31217 >seq86 Length=67758 Score = 104 bits (114), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| ||| || || || ||||| ||||| || |||||| | || Sbjct 45591 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATC 45532 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || ||||||||||||||| ||||| || || | ||| Sbjct 45531 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTCG 45472 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||||||||| | ||| | || ||||| ||||| || || || ||| Sbjct 45471 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 45412 Query 118731 ATCTGCATGGCTTATT 118746 ||| |||| |||| Sbjct 45411 --CTGGATGGTGTATT 45398 >seq248 Length=42843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 133613 AACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCT 133672 || ||| |||||||| | |||||| | || || ||||||||||||||| | ||||| Sbjct 23357 AAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCT 23416 Query 133673 CCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGAC 133732 | | ||| | |||| || |||||||| ||||||||||||||||| || ||||| Sbjct 23417 GTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTACGGAC 23476 Query 133733 GATAATTTTAGTCA 133746 || | || ||||| Sbjct 23477 GACCACTTGAGTCA 23490 >seq15 Length=125974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 45069 TCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGG 45128 || |||| || || | ||| ||| || ||||| | ||||||||||| | | Sbjct 19136 TCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCC 19077 Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188 | || |||||||| | | |||| | || ||||| ||||||||||||||||| | | Sbjct 19076 TAGGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTGG 19017 Query 45189 -TCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAA 45246 | || || ||| | ||| | ||| | || | ||||| ||||| || ||| | || Sbjct 19016 TTGCACTT--GGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAA 18959 Query 45247 TATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 ||||| |||| ||||| || || ||||| ||||| || || || ||||| Sbjct 18958 CATTTCCTTGGGTGGCAAGACAAACTTTTTCGAGAAGCGAGTTGGAGAATA 18908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433708252610584