Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq633 122 1e-22 seq1283 113 5e-20 seq39 111 2e-19 seq13 111 2e-19 seq86 102 9e-17 >seq633 Length=24846 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||||||||| ||||||||||| || || ||||| || ||| || || | Sbjct 19935 CGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 19994 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 19995 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 20054 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 20055 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 20113 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || || || ||||| || Sbjct 20114 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 20152 >seq1283 Length=10397 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| |||| ||||||||||| || || ||||| || || || || | Sbjct 2752 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCA 2693 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || ||||| |||||||| | || | || ||||||| Sbjct 2692 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 2633 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 2632 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 2574 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || || || ||||| || Sbjct 2573 CGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 2535 >seq39 Length=88371 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 31328 CTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 31387 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | || | | ||||||||| ||| | || | |||| Sbjct 31388 GATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC-TGAATCTTCGACTTGACAT 31446 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| || ||||| ||||| || || ||||| | Sbjct 31447 TGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 31506 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 31507 CGAAGATTTGCAT 31519 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || ||||||| || |||||| ||||||||||| || | || ||| || | Sbjct 30775 ACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCC 30834 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || ||||||||||||||||| | || | || ||||| Sbjct 30835 ATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 30894 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | | ||| | || | || | | | | ||| || ||||| || || | || | Sbjct 30895 AT-CTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAA 30953 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || | ||||| || ||||| ||||| Sbjct 30954 TAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 >seq13 Length=129688 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| ||||| || |||| || |||||||| |||||||| Sbjct 71516 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAA 71575 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| || | | |||||| ||| ||| | || | |||| Sbjct 71576 GATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC-TGAATCTTCGACTTGACAT 71634 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || || ||| || || |||| || ||||| ||||| || || ||||| | Sbjct 71635 TGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGA 71694 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 71695 CGAAGATTTGCAT 71707 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||||| || |||||| ||||||||||| || | || ||| || | Sbjct 70963 ACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCC 71022 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || ||||||||||||||||| | || | || ||||| Sbjct 71023 ATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTT 71082 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | || | | | | || || ||||| || || | |||| Sbjct 71083 GT-CTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGA 71141 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || | ||||| || ||||| ||||| Sbjct 71142 TAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| || || || || || | || || ||||||||||||||||| Sbjct 71216 TCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCCAGCTGCTTACCAGCGAAG 71275 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | ||||||||| || | || | | ||||| ||| ||| | || | ||||| | Sbjct 71276 ATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCC-TGAATCTTCGATTTGACATT 71334 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| |||||||| || || || | ||||| || Sbjct 71335 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 71394 Query 43172 AA 43173 || Sbjct 71395 AA 71396 >seq86 Length=67758 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| || | ||| || || |||| || |||||||| |||||||| | Sbjct 45593 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 45534 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 45533 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 45474 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 45473 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 45414 Query 43174 A 43174 | Sbjct 45413 A 45413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571652473372560