Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq258 122 2e-22 seq248 122 2e-22 >seq258 Length=42171 Score = 122 bits (134), Expect = 2e-22 Identities = 428/665 (64%), Gaps = 15/665 (2%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| || ||| || | || | | ||||| ||||| || Sbjct 14014 CTTGACTCCGCTATTGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 14073 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | |||||||| || || ||| ||||||||| Sbjct 14074 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATTGTCGAGCGACCCCAGCACATG 14133 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || | || ||| |||| | ||||| ||| Sbjct 14134 ATTATGCGCGTTGCCGTCGGTATTTGGGGAGACAATATTGAGCGCGTTTTGGAGACCTAC 14193 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||| ||| Sbjct 14194 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCTGGT 14250 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || || || | | |||| | |||||| | ||| Sbjct 14251 ACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGACATGAAGGACGACAGCATTGAC 14310 Query 249079 GGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || ||||| || | ||||| || | ||| || || | || || |||||| Sbjct 14311 GGTATCTACGACACTCTCA---AGACGTGTGCCATGATCTCCAAGATGGCTGGTGGAATC 14367 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || ||||| || || || || Sbjct 14368 GGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTGCCGGCACCAACGGTACA 14427 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | || || ||| | ||| ||||| | | | ||||| Sbjct 14428 TCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACGTTGACCAG 14487 Query 249256 GCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| | ||| || | || ||||| || | || |||||||| || | Sbjct 14488 GGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTG 14547 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| |||| || || | | || || |||||| Sbjct 14548 TTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATCGTGCTCGCGACCTC 14607 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | |||||| || | || | |||||| |||||| | |||| |||||| Sbjct 14608 TTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGG 14667 Query 249433 ACGCT 249437 || || Sbjct 14668 ACCCT 14672 >seq248 Length=42843 Score = 122 bits (134), Expect = 2e-22 Identities = 428/665 (64%), Gaps = 15/665 (2%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| || | ||||| || ||| || | || | | ||||| ||||| || Sbjct 24508 CTTGACTCCGCCATCGTCTACGACAGAGACTTCAACTATCAATACTTTGGCTTCAAGACT 24449 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||||| ||| ||||| |||||| | | ||||||||||| || ||| |||||||||| Sbjct 24448 CTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTCGAGCGACCTCAGCACATG 24389 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| || || ||||| ||| || |||| || |||| | ||||| ||| Sbjct 24388 ATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATCGAACGCGTTTTGGAGACTTAC 24329 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | ||| || | | || | || || ||| |||| || ||||||||||| ||| Sbjct 24328 CACCTCATGTCCAGCAAGCTCT---TCACCCACGCCTCACCTACACTCTTCAACGCTGGT 24272 Query 249019 ACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 ||| | | ||||||| || || || || ||| |||| | |||||| | ||| Sbjct 24271 ACCCCCCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGACATGAAGGACGACAGCATTGAC 24212 Query 249079 GGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAATC 249135 || || || ||||| || | |||| || | ||| || || | || || || ||| Sbjct 24211 GGTATCTACGACACTCTCA---AGACCTGTGCCATGATCTCCAAGATGGCTGGTGGTATC 24155 Query 249136 GGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTC 249195 || | |||| | |||||| || | || || ||||| || || || || Sbjct 24154 GGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACATTGCCGGCACCAACGGTACA 24095 Query 249196 AGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG 249255 | || ||| | ||| | ||||| ||| | ||| ||||| | | | ||||| Sbjct 24094 TCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACACTGCCAGATACGTTGACCAG 24035 Query 249256 GCCGG---GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATA 249312 | ||| ||| || | || || || || | || |||||||| || | Sbjct 24034 GGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTTGGCACGCAGACGTG 23975 Query 249313 TTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTC 249372 || || || || || ||| ||||||| ||||||| || | | || || |||||| Sbjct 23974 TTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTC 23915 Query 249373 TTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||| | |||||| || | || | |||||| |||||| | |||| |||||| Sbjct 23914 TTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAAAGAACGGGGATTGG 23855 Query 249433 ACGCT 249437 || || Sbjct 23854 ACCCT 23850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073448571185536