Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1283 114 1e-20 seq633 114 1e-20 seq39 109 4e-19 seq13 98.7 8e-16 seq864 96.9 3e-15 seq86 96.9 3e-15 >seq1283 Length=10397 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| |||||||||||||| |||||||||||| ||| ||| | || || Sbjct 2746 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCCTCG 2687 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || || ||||| || || | |||||||||||| Sbjct 2686 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 2627 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 2626 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 2567 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || || || || || || ||||| |||||| Sbjct 2566 CCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 2531 >seq633 Length=24846 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| |||||||||||||| |||||||||||| |||| ||| | || || Sbjct 19941 ACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 20000 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || || ||||| || || | |||||||||||| Sbjct 20001 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 20060 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 20061 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 20120 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || || || || || || ||||| |||||| Sbjct 20121 CCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 20156 >seq39 Length=88371 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||||| |||||||| |||||||||||| |||| ||| |||| ||||| || Sbjct 30560 TGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGC 30619 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 |||||||| || || | || || ||||| ||||| | ||||||||| ||| ||| || Sbjct 30620 TTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTG 30679 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || || | | | | || | || || |||| |||||| ||||| || ||| Sbjct 30680 GATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTC 30739 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 | ||||| ||||| |||||||| Sbjct 30740 AAGGTCTTGACAAAAATTTGCAT 30762 >seq13 Length=129688 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45140 GTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCG 45199 || || |||||||| ||||| |||||| |||| ||| |||| ||||| || |||||| Sbjct 70754 GTACTTTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 70813 Query 45200 GCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTA 45259 || || || | || || ||||||||||| | |||||||| ||| ||| || || Sbjct 70814 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 70873 Query 45260 ACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTC 45319 || | | | | | || | || || |||| ||| || ||||| || |||| ||| Sbjct 70874 ACAGTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTC 70933 Query 45320 TTCACAAAGATTTGCAT 45336 || ||||| |||||||| Sbjct 70934 TTGACAAAAATTTGCAT 70950 >seq864 Length=18104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||||||||||||||||||| ||| ||| |||| || || || || || ||||| | Sbjct 8494 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 8435 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| || || || || | ||||||||||| ||||| ||| || Sbjct 8434 TCAATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 8375 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||| ||| ||||| | ||| || |||||||||||||||||||| || | Sbjct 8374 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 8315 Query 45327 A 45327 | Sbjct 8314 A 8314 >seq86 Length=67758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 |||||||||||||||||||| ||| ||| |||| || || || || || ||||| | Sbjct 45593 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAA 45534 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| ||||| || || | ||||||||||| ||||| ||| || Sbjct 45533 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGT 45474 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | ||||| ||| ||||| | ||| || |||||||||||||| ||||| || | Sbjct 45473 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 45414 Query 45327 A 45327 | Sbjct 45413 A 45413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394963964355142