Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq258 95.1 2e-14 seq248 93.3 8e-14 >seq258 Length=42171 Score = 95.1 bits (104), Expect = 2e-14 Identities = 415/650 (64%), Gaps = 10/650 (2%) Strand=Plus/Minus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| || ||||| | |||| ||| || ||||||| | || | || Sbjct 14757 GCCCTCACGCTCATACTTTTCGTAGAGAGCCTCAAATTCCTCGCCATAGCAATCAGCCAG 14698 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT--CACTCTCTCC 94515 |||||||||||||| ||| ||||| |||| ||||| | || | || || | || | Sbjct 14697 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCTTTTCGACGCGCTTC 14640 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||||||||| | | ||| | ||| |||| || || | | | ||||| ||| Sbjct 14639 ATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTA 14580 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAG 94635 ||| ||||||| | |||| |||||| |||||| |||||| | ||| Sbjct 14579 CCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAG 14520 Query 94636 ATGGCTGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTA 94695 ||||| || || | ||||| || |||||| ||| | | | ||| | ||| Sbjct 14519 ATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTG 14460 Query 94696 AAGATTTGGAGGAACGCCATGAGACCAGGGTGG--GTACCACTCCATGAC-GAAATGGGG 94752 |||| |||| | | |||| || | ||| ||||| | || | | |||| Sbjct 14459 AAGACGCGGAGCATGGGAATGATGCC--GTTGGATGTACC-GTTGGTGCCGGCAATGTAA 14403 Query 94753 CTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATG 94812 || | || | | || | || | ||||| ||| ||||| |||||||||| Sbjct 14402 GAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGAGATC 14343 Query 94813 ATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGA 94872 || || | ||| ||||| || || ||||| |||||||| || || | | | | | Sbjct 14342 ATGGCACACGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 14283 Query 94873 AGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCA 94932 ||||| || || || || || | | || ||| || || ||||| || || || Sbjct 14282 AGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 14223 Query 94933 TGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGAT 94992 ||||| || | || |||||||| | || || || | || | || | | Sbjct 14222 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCT 14163 Query 94993 CCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || ||| ||||| || || ||||||||||||| ||| || ||||| || Sbjct 14162 CCCCAAATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGAC 14113 >seq248 Length=42843 Score = 93.3 bits (102), Expect = 8e-14 Identities = 417/653 (64%), Gaps = 16/653 (2%) Strand=Plus/Plus Query 94398 GCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAG 94457 ||| ||| |||||| |||||||| | |||| |||||| ||||||| | || | || Sbjct 23765 GCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAG 23824 Query 94458 GCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT--CACTCTCTCC 94515 |||||||||||||| ||| ||||| |||| ||||| | || | || || | || | Sbjct 23825 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCC--CCGTTCTTTTCGACGCGCTTC 23882 Query 94516 ATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTA 94575 ||||| ||||| | | ||| | ||| |||| || || | | | ||||| || Sbjct 23883 ATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTG 23942 Query 94576 CCGGCATTCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAG 94635 ||| ||||||| | |||| |||||| |||||| |||||| | ||| Sbjct 23943 CCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAG 24002 Query 94636 ATGGC---TGCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACG 94692 || || |||| | || | | ||| || |||||| ||| | | | ||| | | Sbjct 24003 ATAGCAAATGCACCAGGTCGCTTATTG---CCGCCCTGGTCAACGTATCTGGCAGTGTTG 24059 Query 94693 TTAAAGATTTGGAGGAACGCCATGAGACCAGGGTGG--GTACCACTCCATGAC-GAAATG 94749 || |||| | || | | |||| || | ||| ||||| | || | | |||| Sbjct 24060 TTGAAGACGCGAAGCATGGGAATGATGCC--GTTGGATGTACC-GTTGGTGCCGGCAATG 24116 Query 94750 GGGCTTCCTTTTGCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAG 94809 || | || | | || | || | ||||| || ||||| |||||||| Sbjct 24117 TAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAG 24176 Query 94810 ATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCC 94869 || || || ||| ||||| || || ||||| |||||||| || || | | | | Sbjct 24177 ATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCA 24236 Query 94870 AGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAA 94929 | ||||| || || || || || | | || ||| || || ||||| || || Sbjct 24237 ACTAGGAAACAGGAAGACAGCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAG 24296 Query 94930 GCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCT 94989 || ||||| || | || |||||||| | || || || | || || ||||| Sbjct 24297 GCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTG 24356 Query 94990 GATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 ||| ||| ||||| || || ||||||||||||| |||||| ||||| || Sbjct 24357 TCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGAC 24409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989291088702410