Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq258 136 5e-27 >seq258 Length=42171 Score = 136 bits (150), Expect = 5e-27 Identities = 457/704 (65%), Gaps = 12/704 (2%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | |||||||| | | ||| || |||| | | || || ||||| Sbjct 14696 CCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATG 14637 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 |||||||| || ||||| ||||| | || | || | | | || ||| || || || Sbjct 14636 AAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCTTACCG 14577 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 |||||| | ||| || || | | | || ||||| || || | ||| ||| Sbjct 14576 TGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGTAGATG 14517 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | ||||| || ||||| || ||||| || | |||||| || ||||| || | Sbjct 14516 GCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAG 14457 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 || | | ||| ||||| || || ||||||||||| ||||| |||| || || || Sbjct 14456 ACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCCG 14397 Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | ||||| || | || | || || ||||| || ||||| || ||||| | | Sbjct 14396 GTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCCACCAGCCATCTTGGAGATCATGG 14339 Query 66370 CGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 | || ||| || | || || ||||| || || || || || ||| |||||| | ||| Sbjct 14338 CACA-CGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGG 14280 Query 66429 AAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 |||||| ||||| | |||| | || || || || || | ||||| || ||| Sbjct 14279 AAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 14223 Query 66486 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 || || || || || | || | ||| ||||| | | | || |||| | Sbjct 14222 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATATTGTCT 14163 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 ||| || || || || ||||| | ||||||||| |||| || || |||||| | Sbjct 14162 CCCCAAATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCTTGCCG 14103 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 || | ||| | | || ||| | |||| ||| || || ||||| || | || ||| Sbjct 14102 TTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAG 14043 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 |||| ||||| | |||| | |||| || | ||||| | ||| Sbjct 14042 TCTCTGTCGTAGACAATAGCGGAGTCAAGCTCCTCCTTGTGTTT 13999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657982736149680