Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq258 163 4e-35 seq248 136 6e-27 >seq258 Length=42171 Score = 163 bits (180), Expect = 4e-35 Identities = 993/1567 (63%), Gaps = 52/1567 (3%) Strand=Plus/Minus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 15542 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 15483 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| |||||| | || ||||| || ||||| || || Sbjct 15482 GGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCG 15423 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATC--TGATTTTATCTTTTAGAGATTCCCAAT 79228 | || || || | || ||||| | || |||| | || || ||| ||||| | Sbjct 15422 AGCAGCAACGAGTTGCGAATACCGT--GCTCCTTGATCTGCTCCTTCAGATTGTCCCACT 15365 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CG 79287 |||| | ||||| || |||||||| | || |||| |||||||| || | || || Sbjct 15364 CCCATAACTCAGAAGGCTTGACATTCCACATGTCGAATTGAAGAATACC-TTCCGAGGCG 15306 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || || | || || || |||| || || ||| | ||| | || Sbjct 15305 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC 15246 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | || ||| || ||||| ||||| |||| ||| ||||| || | || || | Sbjct 15245 AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGAC 15186 Query 79408 TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || || | |||| || ||| ||||| || | || |||||||||| |||||| Sbjct 15185 TCGAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCAGCAAGACCCTGAACACCAACACCGAT 15127 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTA 79525 |||| ||||| | | || | || | ||| || ||| || |||| || | ||| | Sbjct 15126 GGGTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 15068 Query 79526 TAATTTTATTGAGATTCCTGACTATTACTT---TGACCACATCCTTTAGTTTGAGAAAAT 79582 | || || ||||| || | ||| | |||| ||||| || | || || | || | Sbjct 15067 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACC---TCGTGGAGCTTCTGGAAGT 15011 Query 79583 CAAATCGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACA 79634 | | || || ||| | || || || | || || | ||| |||| || || Sbjct 15010 CGTAGCGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCA 14953 Query 79635 AACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTT 79694 ||| || ||||||| | | || | || || || ||||| ||||| | Sbjct 14952 AACAGCAACCTCATCGGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 14893 Query 79695 AATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 79754 ||||||||| | || | || || |||||| |||| || |||||||| || || || || Sbjct 14892 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 14833 Query 79755 CGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 79814 || | || ||||| |||| || || | || | | ||||| | || | | | Sbjct 14832 GGGGTTGCCCGTTTCGGTCTGGGACTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA- 14775 Query 79815 TATAGACTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATATAATCGTTCGAACTCG 79869 |||| |||| | || | || || | | ||| | | | || || || Sbjct 14774 -ATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTTTCGTAGAGAGCC--TCAAATTCC 14718 Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 || || | ||| | | ||||| || |||| |||||||| | | ||| || || Sbjct 14717 TCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCG 14658 Query 79930 TCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 | || ||| || || ||||| |||||||| || ||||| ||||| | || || || | Sbjct 14657 T--TCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGC 14600 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 80047 | | || || || || || |||||| | ||| || || | | | || | Sbjct 14599 GAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTG 14540 Query 80048 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTA 80107 ||||| || || | ||| ||||| | | || ||||| ||||| || ||||| || | Sbjct 14539 CGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAA 14480 Query 80108 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 80167 |||||| || ||||| || | || | | ||| ||||| || || ||||||||||| | Sbjct 14479 CGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGT 14420 Query 80168 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCC 80225 |||| |||| || || || | ||||| || | || | || || ||||| Sbjct 14419 TGGTGCCGGCAATGTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCC 14362 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATGC 80284 || ||||| || ||||| | || || ||| || | || || ||||| || || |||| Sbjct 14361 ACCAGCCATCTTGGAGATCATGGCACA-CGTCTTGAGAGTGTCGTAGATACCGTCAATGC 14303 Query 80285 TATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCG 80341 | || || |||||| | ||| |||||| ||||| | |||| | || || | Sbjct 14302 TGTCGTCCTTCATGTCGACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAG 14246 Query 80342 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 | || || | ||||| || ||||| || || || |||| || | ||| |||| Sbjct 14245 CGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCT 14186 Query 80402 CAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 | | | | || |||| | ||| || || || || ||||| | |||||||| Sbjct 14185 CCAAAACGCGCTCAATATTGTCTCCCCAAATACCGACGGCAACGCGCATAATCATGTGCT 14126 Query 80462 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAA 80521 | |||| || || |||||| || | ||| | | || ||| | |||| ||| || | Sbjct 14125 GGGGTCGCTCGACAATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGA 14066 Query 80522 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCT 80581 | ||||| || | || ||||||| ||||| | |||| | |||| || | |||| Sbjct 14065 AGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATAGCGGAGTCAAGCTCCTCCT 14006 Query 80582 TATATTT 80588 | | ||| Sbjct 14005 TGTGTTT 13999 >seq248 Length=42843 Score = 136 bits (150), Expect = 6e-27 Identities = 1091/1732 (63%), Gaps = 52/1732 (3%) Strand=Plus/Plus Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || || || || || ||||| |||| ||| || | || |||||| || || ||| Sbjct 22980 GGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTAT 23039 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 || || | | ||||| || |||| ||||| | || || || || ||||| || || Sbjct 23040 GGCTCAAAGCACTCATTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCG 23099 Query 79171 ACCAATAAACTATTTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGAT-TCCCAAT 79228 | || || || | || | ||| || | |||| | || || | || | ||||| | Sbjct 23100 AGCAGCAACGAGTTGCGAATATCGTGCTGCT-TGATCTGCTCCTTCA-AGTTGTCCCACT 23157 Query 79229 CCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CG 79287 |||| | ||||| || |||||||| | || | || |||| ||| || | || || Sbjct 23158 CCCACAACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAACACC-TTCCGAGGCG 23216 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || || | || || || |||| || || ||| | ||| | || Sbjct 23217 GGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTC 23276 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA 79407 | || ||| |||||||| |||||||| | ||| ||||| || | || || | Sbjct 23277 AGGGCAGCGTGGTAAATGGTCTCGAAAATTTGCTTGTTGAGCTCACGGGCCTCGGGAGAC 23336 Query 79408 TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || || | |||| || ||| ||||| || | || |||||||||| |||||| Sbjct 23337 TCGAAGGGC-ATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGAT 23395 Query 79467 AGGTCTATGTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTA 79525 |||| ||||| | | || | || | ||| || ||| || |||| || | ||| | Sbjct 23396 GGGTCGATGTCGCATGTT-GCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGA 23454 Query 79526 TAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAA 79585 | || || ||||| || | ||| | |||| ||| || | || || | || || Sbjct 23455 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGT 23514 Query 79586 ATCGTCCATCTATT------ACAAA--CATGTTCAACGCGACAGATGCCAGATTACAAAC 79637 | || || ||| | || || || | || || | ||| |||| || ||||| Sbjct 23515 AGCGGCCTTCTTTGTAGTCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAAC 23572 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || ||||||| || | || | || || || ||||| || ||| | ||| Sbjct 23573 AGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAAT 23632 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 |||||| | ||||| || || ||||| |||| || ||||| || || || || || || Sbjct 23633 GGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGG 23692 Query 79758 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 79817 | || ||||| |||| | || | || | | ||||| | || | | | || Sbjct 23693 GTTGCCCGTTTCGGTCTGGGCCTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--AT 23749 Query 79818 AGACTTGTATCTCTTT---TCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCT 79872 || |||| | || | || || || | ||| | | | || ||||| || Sbjct 23750 AGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCG 23807 Query 79873 CCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCA 79932 || | ||| | | ||||| || |||| |||||||| | | ||| || || | Sbjct 23808 CCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGT-- 23865 Query 79933 TCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 79990 || ||| || || ||||| || ||||| || ||||| ||||| | || || || | | Sbjct 23866 TCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAG 23925 Query 79991 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 80050 | | || || || || |||||| | ||| || || | | | || | | Sbjct 23926 CACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGT 23985 Query 80051 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGT 80110 |||| || || | ||| || || | | || ||||| || || || ||||| || | || Sbjct 23986 GCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGT 24045 Query 80111 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 80170 |||| || ||||| || | || | | ||| ||||| || || ||||||||||| |||| Sbjct 24046 ATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGG 24105 Query 80171 TCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCC 80228 | |||| || || || ||||||| || | || | || || || || || Sbjct 24106 TGCCGGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACC 24163 Query 80229 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATC 80288 ||||| || ||||| | || || || | || || ||||| || || ||||| || Sbjct 24164 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTC 24223 Query 80289 ATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATT 80345 || |||||| || ||| |||||| ||||| | |||| | || || || || Sbjct 24224 GTCCTTCATGTCAACTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTT 24280 Query 80346 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 80405 || | ||||| || ||||| || || || |||| || | ||| ||||| | Sbjct 24281 GAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAA 24340 Query 80406 AGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 | | ||| || | | ||| || ||||| || ||||| | |||||||||||| Sbjct 24341 AACGCGTTCGATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGG 24400 Query 80466 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACC 80525 || || ||||||||| || | ||| | | || ||| | |||| ||| || || || Sbjct 24401 TCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCC 24460 Query 80526 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATA 80585 ||| || | || ||||||| ||||| | || | |||| || | ||||| | Sbjct 24461 AAAGTATTGATAGTTGAAGTCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTG 24520 Query 80586 TTTGTTAAC-TACATCCATG-GTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA 80643 ||| | || || ||| || | | || || || || || | |||| || Sbjct 24521 TTTCATGACGCACTCGTATGTCTGTT--TCGAGATCATTGGCGAGGCACGCTCATTCTTG 24578 Query 80644 GGATTAACATAGTTGAATAAATC-CT-CCATCACTTCACTAAATAGtttttttGTTTCCT 80701 || || ||||||| | ||| ||| || || || || | | ||||| || | || Sbjct 24579 GGGTTGACATAGTGGTATAGATCGCTGACAACAGCCGAC--CACTGCTTTTTAGTCTGCT 24636 Query 80702 TGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 |||| | || || ||||| || | ||| || | ||| |||||||| ||||| Sbjct 24637 TGTGCAAGTTGGAAACGGCGATACGGGCCGCAAGAATAGCATAATCGGGATG 24688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718061381927280