Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 95.1 1e-14 >seq15 Length=125974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 179/261 (69%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--A 14015 |||||||||| || || || || ||||| || ||||| || || | ||| || | | Sbjct 19546 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 19605 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || ||||| | || | || |||||||||||| ||||| || ||| ||| Sbjct 19606 CC--TGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGC 19663 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTT 14132 ||||| |||||||| |||| | || ||||||| ||| || | | | | | || || Sbjct 19664 AGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTT 19723 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||||||| || ||||| || ||||| | || || | ||||| ||| || | || Sbjct 19724 CCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGC 19783 Query 14193 TTTTTTATACATTACCCATAT 14213 || ||||||||| ||| || Sbjct 19784 CTTCTTATACATTTGCCAAAT 19804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478450595519280