Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq248 154 2e-32 seq15 150 3e-31 seq539 149 9e-31 seq258 136 6e-27 seq712 93.3 6e-14 seq475 89.7 8e-13 >seq248 Length=42843 Score = 154 bits (170), Expect = 2e-32 Identities = 314/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| |||||||||||||| || || || || | || ||||| | || |||| Sbjct 24048 GATACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGAGCCTT 23989 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| ||||||||| | || |||| || ||| ||| ||||| | Sbjct 23988 GGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACC 23929 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || Sbjct 23928 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCGTCGAAA 23869 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || | || | |||| ||| ||||| ||| || || || || ||| | ||||||| Sbjct 23868 AGAACGGGGAT--TGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTA 23811 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| ||||||||||| ||| | || |||| |||||||| || |||| Sbjct 23810 TGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGAC 23751 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| ||| | |||| || ||| | ||||| | ||| ||| || || || | Sbjct 23750 TATTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCGAAACGGGCAAC 23693 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||| ||| || || | || |||||||| | |||| ||| Sbjct 23692 CCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAAATCTGGGAACC 23633 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| |||||||||||||| || | |||||| Sbjct 23632 ATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTAC 23594 >seq15 Length=125974 Score = 150 bits (166), Expect = 3e-31 Identities = 210/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| ||||||| || ||||| | ||||| || ||||||| ||||||| |||||||| Sbjct 19804 ATTTGGCAAATGTATAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 19745 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||| | | ||| ||| || ||| | | || || || Sbjct 19744 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 19685 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || || |||| || Sbjct 19684 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGA-GCG 19626 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 19625 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTCCAGATCATGA 19567 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | ||||| |||| |||||| ||||| || | ||||| Sbjct 19566 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATCGATAGCTACAT 19518 Score = 118 bits (130), Expect = 2e-21 Identities = 334/504 (66%), Gaps = 27/504 (5%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 19407 ATCCGGAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 19351 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || |||||||||||||| ||| |||||| Sbjct 19350 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCG 19291 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || |||||||| || || | |||||| || Sbjct 19290 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCTAACGAACTT 19231 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| || |||| ||| ||||| | ||| | Sbjct 19230 ATCTCCCGTGATGAGGGTTTGCACACAGATTTTG-CAT--GTCTGTTGC---ACT---CG 19180 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | || || | || ||||| | ||| || | || | ||||| || || | Sbjct 19179 CATCTTAAGCACCGAGCCAGCAAGCAAATTATCCAGGATATCATCACCGACGCTGTTGGC 19120 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAA 125716 || || ||||||||| | ||||| | || || || || | | ||||||||| || Sbjct 19119 ATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCAC 19061 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG- 125773 |||||| | || || || ||||| || ||||||||| || |||| |||| Sbjct 19060 ACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCTATTG-----GTTGCACTTGGT 19006 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | ||| | ||||| || || ||||| ||||||||| | ||| || | | Sbjct 19005 AACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 18946 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 || ||||| ||||||||||||||| Sbjct 18945 GGCAAGACAAACTTTTTCGAGAAG 18922 >seq539 Length=27760 Score = 149 bits (164), Expect = 9e-31 Identities = 210/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| | ||||| || ||||||| ||||||| |||||||| Sbjct 7611 ATCTGGCAAATGTACAAGAAGGCTGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 7670 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| ||| || |||||||| | | ||| ||| || ||| | | || || || Sbjct 7671 TCCAAAGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATTTCA 7730 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || | | |||| || Sbjct 7731 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACCTTCTTGA-GCG 7789 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 7790 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGCTGCTTCTATGGATTCCAGATCATGA 7848 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 | || || | ||||| |||| |||||| ||||| || | |||||| Sbjct 7849 TGGAAAATATTCACTCTGAAACATACTCTCTCCTGATCGATAGCTACATT 7898 Score = 111 bits (122), Expect = 2e-19 Identities = 334/506 (66%), Gaps = 31/506 (6%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 8011 ATCCGAAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 8067 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || ||||| |||||||| ||| ||||| Sbjct 8068 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGTATCTTCTTCAGCGGTGCCTTTGCC 8127 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || ||||| || || || | |||||| || Sbjct 8128 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTCACCTTCTCTAACGAACTT 8187 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| ||||||||| | ||||| | ||| | Sbjct 8188 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCCTGT---CTGTTGC---ACT---CG 8238 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCA--ACATTGTAACCGATGCCGTGA 125655 | || || | || ||||| | ||| | ||| | ||| | ||||| || || Sbjct 8239 CATCTAAAGCACCGAGCCAGCAA--GCAAGTTATTCAGGATATTATCACCGACGCTGTTG 8296 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGC 125714 | || || ||||||||| | ||||| | || || || || | | ||||||||| | Sbjct 8297 GCATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCC 8355 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTG 125772 | |||||| | ||||| || ||||| || ||||| ||| || |||| ||| Sbjct 8356 ACACTAATGAAGCAATACATTGAATTTGTCGCCGATCGCCTATTG-----GTTGCTCTTG 8410 Query 125773 G---CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 | | ||| | ||||| || || ||||| ||||||||| | ||| || | | Sbjct 8411 GTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGAAAACATTTCCTTGG 8470 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAG 125855 || ||||| ||||| ||||||||| Sbjct 8471 GTGGCAAGACAAACTTCTTCGAGAAG 8496 >seq258 Length=42171 Score = 136 bits (150), Expect = 6e-27 Identities = 310/459 (68%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| |||||||| || || || || || || | ||| ||||| | || |||| Sbjct 14474 GATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGCCTT 14533 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| || |||||| | || |||| || ||| || ||||| | Sbjct 14534 GGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAGAACCACGGTAAGGAAGAAAATC 14593 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || Sbjct 14594 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAA 14653 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || | || | |||| ||| ||||| ||| || || || || ||| | ||||||| Sbjct 14654 AGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGATTGCTA 14711 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| || |||||||| ||| || |||| |||||||| || |||| Sbjct 14712 TGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGTGGCCGCAAGAC 14771 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| ||| | |||| || ||| | ||||| | | | ||| || || || | Sbjct 14772 TATTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAAACGGGCAAC 14829 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| || || | || |||||||| || |||| ||| Sbjct 14830 CCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACC 14889 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || ||||||| ||||||||||| || | |||||| Sbjct 14890 ATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 14928 >seq712 Length=22362 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 9490 TCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGCT 9431 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||||| | |||||||| || | | |||||||||||| ||||| | | ||| Sbjct 9430 GGTGTACCGATACGGATGCCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTC 9371 Query 126802 TTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 9370 TTGTTGCAAGCAAT 9357 >seq475 Length=30569 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126682 TCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCA 126741 |||||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || Sbjct 20432 TCAATGTACTTGGCGACGCGCTCAAAGTCACTCTCGCCGAAACCACGGCTCGTCATGGCT 20491 Query 126742 GGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTT 126801 || ||||||| | ||| |||| || | | |||||||||||| ||||| | | ||| Sbjct 20492 GGTGTACCGATACGGATACCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTC 20551 Query 126802 TTGTTGCAAGCGAT 126815 ||||||||||| || Sbjct 20552 TTGTTGCAAGCAAT 20565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740845200629520