Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 seq39 86.0 5e-12 >seq13 Length=129688 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| ||||||||||| ||||||||||| || | || ||| | | ||||| Sbjct 70970 ACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCG 71029 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | || |||| |||||| || ||| | ||| || ||||| | Sbjct 71030 AGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 71089 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||||| | ||| ||||| || || ||| | || || || || Sbjct 71090 ATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTG 71149 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| ||||| || || ||||| Sbjct 71150 CCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 >seq39 Length=88371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| ||||||||||| || | || ||| | | ||||| ||||| Sbjct 30788 TGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGC 30847 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| | || |||| |||||| || ||| | ||| || || || ||| || Sbjct 30848 TTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTA 30907 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||||| | ||| ||||| | ||| || ||| | ||||| || || || || Sbjct 30908 GACTTTACATTATCGATCGTATC-CGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGT 30966 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| || || ||||| Sbjct 30967 CAAAGTCTTGACGAAGATCTGCAT 30990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414456074696188