Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq539 107 2e-18 seq15 98.7 9e-16 >seq539 Length=27760 Score = 107 bits (118), Expect = 2e-18 Identities = 175/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || ||||||||||||||| || ||||| ||||| || || | |||||| | | Sbjct 7869 TTTCAGAGTGAATATTTTCCATCATGATCTGGAATCCATAGAAGCAGCGAGCCTCCGGAA 7810 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||| ||| | || | || | |||||| || || || |||||| ||||| Sbjct 7809 CCTGAACCTCGCCGCTGAAACGCTCAAGAAGGTTTTCATTGACAATGCCGTCAGAAGCAG 7750 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA-AC--TTTAACC 13625 |||| || || | ||||| ||| || | ||| |||| || || || || || Sbjct 7749 CAAAGAATGCCAAAATGTGTGAAATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCC 7690 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | || ||||| || | ||| | ||| || | ||||| ||||| || |||||| Sbjct 7689 AATCGTGCAAGTCTTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCAGCCT 7630 Query 13686 TCTTATACAT 13695 |||| ||||| Sbjct 7629 TCTTGTACAT 7620 >seq15 Length=125974 Score = 98.7 bits (108), Expect = 9e-16 Identities = 173/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || |||||||| |||||| || ||||| ||||| || || | |||||| | | Sbjct 19546 TTTCAGAGTGAATATTCTCCATCATGATCTGGAATCCATAGAAGCAACGAGCCTCCGGAA 19605 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||| ||| | || | || |||||||| || || || |||||| ||||| Sbjct 19606 CCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTTTTCATTGACAATGCCGTCAGAAGCAG 19665 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA-AC--TTTAACC 13625 |||| || || | ||||| || || | ||| |||| || || || || || Sbjct 19666 CAAAGAATGCCAAAATGTGTGAGATGAAGTATTTCTCGTCGTCGCTCAGACGGTTGTTCC 19725 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 |||| | || || || || | ||| | ||| || | ||||| ||||| || | |||| Sbjct 19726 AATCGTGCAAGTCCTTGGACAGATCGATCTCTTCGGCCGTCCAGAAAGAGGCTTCGGCCT 19785 Query 13686 TCTTATACAT 13695 |||||||||| Sbjct 19786 TCTTATACAT 19795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430861054481004