Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 seq4 89.7 4e-13 >seq24 Length=106944 Score = 104 bits (114), Expect = 2e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||| |||||| || ||||| |||| | | || ||||| | ||||| || Sbjct 32107 CCCGTGCTCCCGAACCCACCTGCTCCTCGCACACTCTCCTCCAGCTCCTGTACCTCCACC 32166 Query 5564 ACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 || ||||| | || |||||| ||||| ||||| | || ||||||| ||| | Sbjct 32167 ACCTCGGGCGT-GTAGATGCGCTCAATGATCAATTGCGCCACTCTGTCGCCCTCCTTGAT 32225 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 ||| || ||| | | | | |||||| |||| || || | ||||||||| ||||| Sbjct 32226 CTCAAAGTCGGTCTCGGCATGGTTGAAAAGCAGGACCTTGACTTGGCCGCGGTAATCGGC 32285 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 ||| || || |||||||| |||||||| || ||| || || || ||||||||||| Sbjct 32286 GTCAATGACTCCCGCGCCAGTATCGATGAAATGTTTGCTTGCGAGACCAGAGCGGGGAGC 32345 Query 5743 CACGCGGCCGT 5753 | |||||||| Sbjct 32346 AATGCGGCCGT 32356 >seq4 Length=147682 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCG 5641 ||||| ||||| ||||| | || ||||||| ||| | ||| || ||| | | | Sbjct 38021 CGCTCAATGATCAATTGCGCCACTCTGTCGCCCTGCTTGATCTCAAAGTCGGCCTCGGCA 38080 Query 5642 AAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCC 5701 |||||| |||| || || | ||||||||| |||||||| || || |||||||| Sbjct 38081 TGGTTGAAAAGCAGGACCTTGACCTGGCCGCGGTAATCGGCGTCAATGACTCCCGCGCCG 38140 Query 5702 ACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 |||||||| || ||| || || || ||||||||||| | |||||||| Sbjct 38141 GTATCGATGAAATGTTTGCTTGCGAGACCAGAGCGGGGAGCAATGCGGCCGT 38192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933315764624