Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq39 111 1e-19 seq633 96.9 3e-15 seq1283 93.3 4e-14 >seq39 Length=88371 Score = 111 bits (122), Expect = 1e-19 Identities = 157/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 |||||||| |||||| |||||||||||||||| | | || || ||||||| ||||| Sbjct 31317 TGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTG-CGGCCGTCCTCGAGCTG 31375 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | |||| ||||||||| || || | | |||||||||| ||| || Sbjct 31376 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGAATCTT 31435 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || ||||| | ||||| ||||| || ||||| || ||||| Sbjct 31436 CGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 31495 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCTT-GATC 48738 ||| || || || || || ||||| || ||| |||| Sbjct 31496 GAGGGTCTTGACGAAGATTTGCATGGTTGCTTCGATC 31532 >seq633 Length=24846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || ||||||||||| || |||||||| || || Sbjct 19922 ACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 19980 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||| ||||||||||| | | || | || ||||| ||| | Sbjct 19981 TCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGG 20040 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| |||| |||||| Sbjct 20041 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTC 20098 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 | ||| | || || || || || ||||| ||||| || |||||||||||| || || Sbjct 20099 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 20156 >seq1283 Length=10397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||||||||||| || |||||||| || ||| || | ||||| Sbjct 2747 CACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCCTC 2688 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || | || ||||| ||| || | | ||||||||| Sbjct 2687 GAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 2628 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| |||| ||||||| ||| | || || || Sbjct 2627 GATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 2570 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || || ||||| ||||| || |||||||||||| || || Sbjct 2569 TTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 2531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421132594355102