Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1283 109 5e-19 seq13 109 5e-19 seq39 86.0 6e-12 >seq1283 Length=10397 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || ||||| || | ||| || ||||||| ||| | | Sbjct 2752 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCA 2693 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | || |||||| || || ||||| || || ||| Sbjct 2692 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 2633 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | || || |||| ||||| Sbjct 2632 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 2573 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || || |||||||| Sbjct 2572 GTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 2538 >seq13 Length=129688 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || |||| ||||| ||||||||||| ||||| || | Sbjct 70939 AAAAATTTGCATACCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAAT 70998 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || ||| || ||| | |||||| ||||| || || ||||||| | || || Sbjct 70999 ATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTG 71058 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| ||||| ||||| | ||| || ||||| || ||| || || Sbjct 71059 CTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATC 71118 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||||| || || ||||| | ||| || || ||||||||||| Sbjct 71119 CGAAGATTCGACTTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| |||| |||||||| |||||||||||||| || Sbjct 71251 ATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTT 71310 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || | ||||| | ||| ||||| | | ||||| || | ||||| Sbjct 71311 ATCCTGAATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 71370 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| |||||||| | ||| || |||| Sbjct 71371 GGTCTTTCCAGTCAAAGTCTTGACAA 71396 >seq39 Length=88371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | || |||| || || |||| |||||| ||||| || | Sbjct 30751 AAAAATTTGCATACCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAAT 30810 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || ||| || ||| | |||||| ||||| || || ||||||| | || || Sbjct 30811 ATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTG 30870 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| ||||| || || | ||| || | ||| || ||| || || Sbjct 30871 CTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATC 30930 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || || || ||||| | ||| || || ||||||||||| Sbjct 30931 CGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448161744708720