Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq173 176 7e-40 seq735 165 1e-36 seq62 165 1e-36 >seq173 Length=51579 Score = 176 bits (194), Expect = 7e-40 Identities = 200/263 (76%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| |||| |||||| || |||||||| || ||||||||||| |||| Sbjct 28544 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 28602 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| |||||||| ||||||||| |||||| || | || ||||||| Sbjct 28603 TTCGCCGCCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGCCATGATTTACGAAGAGA 28662 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACC 16609 ||| ||| ||||||| |||||| | || |||| ||||||| || || || || Sbjct 28663 CTCGCACTGTCTTGAAGACTTTCCTCGAAGGTGTCATCCGTGATGCTGTTACA-TACACA 28721 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || ||||| ||||| ||||| ||||| || | || |||| || || | || || ||| Sbjct 28722 GAACACGCAAAACGAAAGACCGTCACGTCTCTCGACGTCGTGTACGCGCTAAAGCGACAA 28781 Query 16670 GGCCGTAAGATTTATGGTTTTGG 16692 ||||||| | ||||| || || Sbjct 28782 GGCCGTACCTTATATGGGTTCGG 28804 >seq735 Length=21740 Score = 165 bits (182), Expect = 1e-36 Identities = 184/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 9244 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 9302 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || |||||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 9303 CCGACGCCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 9362 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| ||||||| || || |||| |||||| || ||| || || Sbjct 9363 CCGCACTGTCCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 9422 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || | ||||| || |||| || || || Sbjct 9423 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCTCTGAAGCGACAGGG 9482 Query 16672 CCG 16674 ||| Sbjct 9483 CCG 9485 >seq62 Length=74604 Score = 165 bits (182), Expect = 1e-36 Identities = 184/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 20524 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 20582 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 20583 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 20642 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| |||||| || || |||| |||||| || ||| || || Sbjct 20643 CCGCACTGTCCTCAAGACGTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 20702 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || | ||||| || |||| || || || Sbjct 20703 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCTCTGAAGCGACAGGG 20762 Query 16672 CCG 16674 ||| Sbjct 20763 CCG 20765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79054077679686