Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-15 >seq13 Length=129688 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || |||||||| | |||||| | ||| | ||||| Sbjct 70950 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 70891 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| |||||| |||||| || || || || || |||||||| || Sbjct 70890 GATACCATCGACACTGTCAAATCCAAGATTCAGGATAAGGAGGGAATCCCTCCCGACCAG 70831 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| |||| |||| | ||| || || || ||||| | | | | |||||||||||| Sbjct 70830 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTATAAC 70771 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||| |||| | |||| || || Sbjct 70770 ATCCAGAAGGAAAGTACTTTGTATCTCGTGCT 70739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 26779 TTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCG 26838 |||| || || || |||||||| | |||||| |||| | || || ||||||||||| Sbjct 71396 TTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCG 71337 Query 26839 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCA 26898 | | |||||| |||||| || || ||||| || ||||| ||||| || || | | Sbjct 71336 ACAATGTCAAATCGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGA 71277 Query 26899 TTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAG 26958 | | || || || || || ||||||| | | | | || |||||| || || || || | Sbjct 71276 TCTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGG 71217 Query 26959 AATCTACTATCCATCTGGTCCT 26980 |||| ||| | || || || || Sbjct 71216 AATCCACTCTTCACCTTGTACT 71195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478524174265440