Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq258 374 2e-98 seq248 356 6e-93 seq15 84.2 6e-11 >seq258 Length=42171 Score = 374 bits (414), Expect = 2e-98 Identities = 1078/1634 (66%), Gaps = 42/1634 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||| ||||||| Sbjct 14215 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCC 14274 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || ||||||| ||||| || |||| Sbjct 14275 TGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACG 14334 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || ||||| || | | || ||||| | ||||| Sbjct 14335 TGTGCCATGATCTCCAAGATGGCTGGTGGAATCGGCTTGAACG-TCCACCGCATCCGTGC 14393 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | |||||||||| Sbjct 14394 TACCGG-CTCTTACATTGCCGGCACCAACGG-TACATCCAACGGCATCATTCCCATGCTC 14451 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 14452 CGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCA 14511 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||||||| || || || | || || |||||||| | || || Sbjct 14512 TTTGCCATCTACCTCGAGCCTTGGCACGCAGACGTGTTCGACTTTCTTGATTTGCGAAAG 14571 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 14572 AACCACGGTAAGGAAGAAAATCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 14631 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAAT 364021 | || ||||||||||| || | | | | ||||| | ||| | || || |||| | Sbjct 14632 CTCTTCATGAAGCGCGTCGAA--AAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGT 14689 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| |||||||||||||| Sbjct 14690 GCCCTGGCCTGGCTGATTGCTATGGCGAGGAATTTGAGGCTCTCTACGAAAAGTATGAGC 14749 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| ||||| | || | Sbjct 14750 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGT 14809 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| || || || | |||| |||| ||||||| ||| | |||||| | ||| || Sbjct 14810 CCCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCA 14869 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| || || |||| |||| |||||| || || ||||| ||||| ||| Sbjct 14870 ACCAGAAGAACCTGGGAACCATTC-GCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 14928 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || ||||| ||| ||| || || ||| | || || | || || || || || || Sbjct 14929 TGTGCCCCCGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTC 14988 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 14989 GACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTCAC---TCAAGTGGTC 15045 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | || || || |||| || ||| || || || Sbjct 15046 GTCCGTAACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAAC 15105 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || ||||||| || Sbjct 15106 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTT 15160 Query 364487 TTATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||||| ||| | || || || || || || |||| || || ||| |||| Sbjct 15161 TTCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGAT 15218 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGG 364603 ||| || || || || || || |||| || || ||| ||| |||| | ||| | Sbjct 15219 CTTCGAGACCATCTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-G 15277 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||||||| | |||| || || ||| | || | | || || || | | Sbjct 15278 GCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTATTCTTCAATTCGACATGT 15337 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAG 364722 ||||||||| ||| |||| |||| | ||||| | || | | | | | ||| || Sbjct 15338 GGAATGTCAAGCCTTCTGAGTTATGGGAGTGGGACAATCTGAAGGAGC-AGATCAAGGAG 15396 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||| ||||||||| | | || ||||||||||| || || || | || || Sbjct 15397 CACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCATCGACCTCGCAAATT 15456 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 15457 CTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTG 15516 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || ||||| | ||| || || | || |||||||||| |||| || || Sbjct 15517 GCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGACATGGGTCTC 15576 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| |||||||||| ||||| |||| |||||||| | |||||||| || Sbjct 15577 TGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAATGGTTCCATTCAGAACATCCCC 15636 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| || | || || || || ||||| ||||| ||| | Sbjct 15637 AATATCCCCGCCGACATCAAGGCTCTCTATAAGACTGTTTGGGAGATTTCTCAGCGTCAT 15696 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 | || | ||||| |||||||||||||| |||||| ||| ||||||| | ||||| Sbjct 15697 GTTATCCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTC 15756 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| | || || ||||| || || ||||| | Sbjct 15757 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 15816 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 15817 GGTCTCAAGACGGG 15830 >seq248 Length=42843 Score = 356 bits (394), Expect = 6e-93 Identities = 1074/1634 (66%), Gaps = 42/1634 (3%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| ||||| || | | ||| ||||||| Sbjct 24307 TTCACCCACGCCTCACCTACACTCTTCAACGCTGGTACCCCCCAATGTCAGCTGTCTTCC 24248 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || ||||||| ||||| || |||| Sbjct 24247 TGTTTCCTAGTTGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACC 24188 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || || || | | || ||||| | ||||| Sbjct 24187 TGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCACCGCATCCGTGC 24129 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||||||| |||||| || ||| || || || | ||||||||||| Sbjct 24128 CACCGG-CTCTTACATTGCCGGCACCAACGG-TACATCCAACGGCATCATTCCCATGCTT 24071 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 24070 CGCGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCA 24011 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 |||||||| || ||||||||| || || || | ||||| |||||||| | || || Sbjct 24010 TTTGCTATCTACCTCGAGCCTTGGCACGCAGACGTGTTTGACTTTCTTGATTTGCGAAAG 23951 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 23950 AACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 23891 Query 363964 CATTTTATGAAGCGCGTGG--AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | ||| ||||||||||| | | | | | | ||||| | ||| | || || |||| | Sbjct 23890 CTTTTCATGAAGCGCGTCGAAAAGAACG--GGGATTGGACCCTCATGTGTCCCAACGAGT 23833 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| ||||| |||||||| Sbjct 23832 GCCCTGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGC 23773 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| ||||| | || Sbjct 23772 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGG 23713 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| || || || | |||| |||| ||||||||||| | |||||| | ||| || Sbjct 23712 CCCAGACCGAAACGGGCAACCCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCA 23653 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| | | || || || |||| |||| | || || || || ||||| ||||| ||| Sbjct 23652 ACCAGAAAAATCTGGGAACCATTC-GCAGCTCTAATCTGTGCACGGAGATCATTGAGTAC 23594 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || || ||| ||| || || ||| | || || | || || || || || || Sbjct 23593 TGTGCCCCTGATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGTC 23534 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 23533 GACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTGAC---TCAAGTGGTC 23477 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | ||||| || |||| || ||| || || || Sbjct 23476 GTCCGTAACCTCAACAAGATCATCGATGTCAACCATTACCCCATTGAGGAGGCTCGCAAC 23417 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || || |||| || Sbjct 23416 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTT 23362 Query 364487 TTATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||||| ||| | || || || || || || |||| || || ||| | || Sbjct 23361 TTCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAAT 23304 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGG 364603 || || || || || || || |||| || || ||| ||| |||| | ||| | Sbjct 23303 TTTCGAGACCATTTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-G 23245 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||||||| | |||| || || ||| | || | ||||| || | | Sbjct 23244 GCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTGTTCTTCAGTTCGACATGT 23185 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGA-TACGCTACGTTCCAACGTTAAGAAG 364722 ||||||||| ||| |||| ||| | ||||| || | | | | | ||| || Sbjct 23184 GGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAACTTGAAGGAGC-AGATCAAGCAG 23126 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || | || ||||||||| | | || ||||||||||| || ||||| | || ||| Sbjct 23125 CACGATATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAATC 23066 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 23065 CTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTG 23006 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || ||||| | ||| || || | || |||||||||| ||| || || Sbjct 23005 GCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTT 22946 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| ||| |||||||||| ||||| |||| || ||||| | ||||||||||| Sbjct 22945 TGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATTCCC 22886 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| || | ||||| || || ||||| ||||| ||| | Sbjct 22885 AATATCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCGTCAT 22826 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 | || | ||||| ||||||||||||||||||||| ||| ||||||| | ||||| Sbjct 22825 GTTATCCAGATGGCCGCCGATCGCGGTGCTTTTATCGACCAGTCCCAGTCGCTCAACGTT 22766 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| | || || ||||| || || ||||| | Sbjct 22765 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 22706 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 22705 GGTCTCAAGACGGG 22692 >seq15 Length=125974 Score = 84.2 bits (92), Expect = 6e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 22758 TCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCT 22817 |||| | || || || ||| | ||||| ||||||| ||||||| || |||||||| Sbjct 19081 TCTCCTAGGCATGAACGCCACACTAATGAAGCAATATATTGAATTTGTCGCCGATCGTCT 19022 Query 22818 ATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGA 22877 ||| || |||| ||| | | |||| || || || || || || || | ||||| Sbjct 19021 ATTGGTTGCACTTGGTAACGAAAAGGTATACAAAACCGCCAACCCCTTCGATTTCATGGA 18962 Query 22878 ACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAA 22937 ||||| | | || ||||| || || ||||| || ||||||| ||||| ||||| Sbjct 18961 GAACATTTCCTTGGGTGGCAAGACAAACTTTTTCGAGAAGCGAGTTGGAGAATATCAAAA 18902 Query 22938 AGCAGGTGTTATGG 22951 || || ||||||| Sbjct 18901 GGCTGGCGTTATGG 18888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302967814665764