Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq13 105 6e-18 seq39 96.9 3e-15 >seq13 Length=129688 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 24001 TTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCG 24060 |||| || || || |||||||| | || ||| |||| |||||| || ||||||||||| Sbjct 71396 TTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCG 71337 Query 24061 AGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGA 24120 | | |||||| |||||| || || ||||| || ||||| ||||| ||| || ||| Sbjct 71336 ACAATGTCAAATCGAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAGCAGCGATTGA 71277 Query 24121 TTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAG 24180 | | || || ||||| || ||||||| | | | || ||| || || || || || | Sbjct 71276 TCTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGAAGG 71217 Query 24181 AATCTACAATTCA 24193 |||| || |||| Sbjct 71216 AATCCACTCTTCA 71204 >seq39 Length=88371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| ||| || || || || || ||||| | || ||| | || |||||| || | Sbjct 31217 ATGCAATAGTT-GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 31159 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || || || || ||||| ||||| Sbjct 31158 GACACCATCGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAG 31099 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||||| || || ||||| || ||||||| | | | | || ||| || || Sbjct 31098 CAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 31039 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 31038 ATCCAGAAGGAATCCACCCTTCA 31016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429814949100810