Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq258 145 1e-29 seq248 125 9e-24 >seq258 Length=42171 Score = 145 bits (160), Expect = 1e-29 Identities = 462/709 (65%), Gaps = 12/709 (2%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | |||||||| | | ||| || |||| | | || || | Sbjct 14701 CCAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCT 14642 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| |||||||| || ||||| ||||| | || || || | | | || ||| || | Sbjct 14641 TCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCCT 14582 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || |||||| | ||| || || | | | || | ||||| || || | || Sbjct 14581 TACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAACACGTCTGCGTGCCAAGGCTCGAGGT 14522 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || ||||| || | |||||| || ||||| | Sbjct 14521 AGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTTGT 14462 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| ||||| || || ||||||||||| ||||| || | || || Sbjct 14461 TGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAG 14402 Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | ||||| || | || | || || ||||| || ||||| || ||||| Sbjct 14401 AGCCGGTAGCACGGATGCGGTGGACGTTCA-AG-CCGATTCCACCAGCCATCTTGGAGAT 14344 Query 63376 TAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 | || || ||| || | || || ||||| || || || || || ||| |||||| | Sbjct 14343 CATGGCACA-CGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGA 14285 Query 63435 GTAGAAAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAG 63491 ||| |||||| ||||| | |||| | || || || || || | ||||| | Sbjct 14284 CTAGGAAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTG 14228 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63551 | ||||| || || || || | || | ||| ||||| | | | || |||| Sbjct 14227 AGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAATAT 14168 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 | ||| || || || || ||||| | ||||||||| |||| || || |||| Sbjct 14167 TGTCTCCCCAAATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAATCT 14108 Query 63612 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 63671 || ||| | ||| | | || ||| | |||| ||| || || ||||| || | || Sbjct 14107 TGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGT 14048 Query 63672 AAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 ||||||| ||||| | |||| | |||| || | ||||| | ||| Sbjct 14047 TGAAGTCTCTGTCGTAGACAATAGCGGAGTCAAGCTCCTCCTTGTGTTT 13999 >seq248 Length=42843 Score = 125 bits (138), Expect = 9e-24 Identities = 746/1184 (63%), Gaps = 31/1184 (3%) Strand=Plus/Plus Query 62556 AGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62614 |||| || ||| ||||| || | || |||||||||| |||||| |||| ||||| | | Sbjct 23352 AGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATG 23411 Query 62615 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62674 || | | ||| || ||| || |||| || | ||| || || || ||||| || Sbjct 23412 TTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCGATGATCTTGTTGAGGTTA 23471 Query 62675 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT--- 62731 | ||| | |||| ||| || | || || | || || | || || ||| | Sbjct 23472 CGGACGACCACTTGAGTCACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAG 23531 Query 62732 ---ACAAA--CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 || || || | || |||| ||| |||| || ||||| || ||||||| || Sbjct 23532 TCGACGAAGGCAGG--CAGGGCAAGAGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGG 23589 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 | || | || ||||| ||||| |||||| | |||||||| | ||||| | Sbjct 23590 CACAGTACTCAATGATCTCCGTGCACAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCT 23649 Query 62847 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 62906 | || ||||| |||| || ||||| || || || || || || | || ||||| ||| Sbjct 23650 GGTTGCTCTTCCTGTTGCAGGCATCTTTGTACAGCATAAAGGGGTTGCCCGTTTCGGTCT 23709 Query 62907 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT-CTTT 62965 | | || | || | | ||||| | || | | | |||| ||| | | Sbjct 23710 GGGCCTCGAGGATGGAGTACCAGA-GCTTCTGGGCACGA--ATAGTCTTGCGGCCACGGC 23766 Query 62966 TCTCTTTCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021 ||| | ||| | ||| | | | || ||||| || || | || |||| Sbjct 23767 CCTCACGCTCATACTTCTCGTAGAGAGCC--TCAAACTCCTCGCCATAGCAATCAGCCAG 23824 Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63081 ||||| || || | |||||||| | | ||| || |||| | | || || ||||| Sbjct 23825 GCCAGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCAT 23884 Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 || ||||| || ||||| ||||| | || || || | | | | ||| || || || Sbjct 23885 GAAAAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCC 23944 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 |||||| | ||| || || | | | || | ||||| || || | ||| || Sbjct 23945 GTGGTTCTTTCGCAAATCAAGAAAGTCAAACACGTCTGCGTGCCAAGGCTCGAGGTAGAT 24004 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 || | | ||||| || || || || ||||| || | |||||| || ||||| || | Sbjct 24005 AGCAAATGCACCAGGTCGCTTATTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAA 24064 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 || | | ||| ||||| || || ||||||||||| ||||| || | || || || Sbjct 24065 GACGCGAAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAATGTAAGAGCC 24124 Query 63322 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||||||| || | || | || || || || || ||||| || ||||| | Sbjct 24125 GGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAGATCATG 24182 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || || | || || ||||| || || || || || ||| |||||| || ||| Sbjct 24183 GCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCAACTAGG 24242 Query 63440 AAACAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 |||||| ||||| | |||| | || || || || || | ||||| || ||| Sbjct 24243 AAACAGGAAGACA---GCTGACATTGGGGGGTACCAGCGTTGAAGAGTGTAGGTGAGGCG 24299 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63556 || || || || || | || | ||| ||||| | | | || || | | Sbjct 24300 TGGGTGAAGAGCTTGCTGGACATGAGGTGGTAAGTCTCCAAAACGCGTTCGATGTTGTCT 24359 Query 63557 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63616 ||| || || || || ||||| | |||||||||||||| || ||||||||| | Sbjct 24360 CCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCG 24419 Query 63617 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63676 || | ||| | | || ||| | |||| ||| || || ||||| || | || ||| Sbjct 24420 TTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAG 24479 Query 63677 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 |||| ||||| | || | |||| || | ||||| | ||| Sbjct 24480 TCTCTGTCGTAGACGATGGCGGAGTCAAGCTCCTCCTTGTGTTT 24523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633449022919200