Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq39 107 2e-18 seq13 107 2e-18 >seq39 Length=88371 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || ||| | ||||| || || || Sbjct 30990 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 30931 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| || || ||||| ||||| |||||||| Sbjct 30930 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GATAAGGAAGGCATTCCCCCTGACCA 30872 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| || ||| || ||| ||||| Sbjct 30871 GCAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 30812 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || |||||||| || Sbjct 30811 TATTCAGAAGGAGTCTACTCTGCATTTAGTCCT 30779 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || | ||||| || || ||| Sbjct 30762 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 30703 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || || | || | ||| || || || || || || |||||| Sbjct 30702 GATACCATCGA--CAATGTCAAATCCAAGATTCAG-GATAAGGAGGGTATCCCTCCTGAC 30646 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||| ||| Sbjct 30645 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTAC 30586 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| ||| | ||| | ||||| Sbjct 30585 AACATCCAGAAGGAAAGCACTTTGCATCTCGTGCT 30551 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/206 (72%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| || |||| |||||||||||||| || ||||||| | || || ||||| || Sbjct 31217 ATGCAA-TAGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 31159 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| || || || || || || ||||| Sbjct 31158 GACACCATCGA--CAATGTCAAGTCGAAGATTCA-GGATAAGGAGGGTATCCCTCCTGAT 31102 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || || || | ||||||| || || | ||| ||| Sbjct 31101 CAGCAGCGATTGATTTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTAC 31042 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || |||||||| || || Sbjct 31041 AATATCCAGAAGGAATCCACCCTTCA 31016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| |||||||| || || ||||| | ||||| || |||| || |||| || ||||| Sbjct 31523 AACCATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTC 31464 Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||| ||||| || || || ||| | || | ||| ||||| ||||| || || || Sbjct 31463 GTCTGATACTATTGA--CAATGTCAAGTCGAAGATTCA-GGACAAGGAAGGAATCCCCCC 31407 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 |||||| ||||| | || || || || || || | || || | |||||| | || Sbjct 31406 TGACCAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCTGA 31347 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| ||||| || || || || || || Sbjct 31346 TTACAACATTCAGAAGGAGTCAACACTTCA 31317 >seq13 Length=129688 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | |||||| | ||||| || || || Sbjct 71178 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACATTGGAAGTCGAATCTTCG 71119 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| ||||| ||||| ||||| |||||||| Sbjct 71118 GATACAATCGATAATGTAAAGGCTAAGATTCAA-GACAAGGAAGGCATTCCCCCTGACCA 71060 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| || ||| || ||| ||||| Sbjct 71059 GCAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 71000 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || | ||||| || || Sbjct 70999 TATTCAGAAGGAGTCTACTTTGCATTTGGTCCT 70967 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| ||||||||||| || || ||||||| |||| || ||||| || ||||| |||| Sbjct 71396 TTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCG 71337 Query 25069 AGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 | || || || | || | ||| || || ||||| ||||| ||||| || ||||| Sbjct 71336 A--CAATGTCAAATCGAAGATTCA-GGATAAGGAAGGTATTCCTCCTGATCAGCAGCGAT 71280 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || || || || || || | ||||||| ||| || | | ||| |||||||| || | Sbjct 71279 TGATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTCGCCGACTACAATATCCAGA 71220 Query 25186 AAGAATCCACGCTACA 25201 | |||||||| || || Sbjct 71219 AGGAATCCACTCTTCA 71204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | ||||| | ||||| || || ||| Sbjct 70950 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCTTGGAAGTCGAATCTTCT 70891 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| ||||| || | || | ||| || || || || || || || ||| Sbjct 70890 GATACCATCGA--CACTGTCAAATCCAAGATTCAG-GATAAGGAGGGAATCCCTCCCGAC 70834 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||| || Sbjct 70833 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTAT 70774 Query 25176 AATATTCAAAAAGAA 25190 || || || || ||| Sbjct 70773 AACATCCAGAAGGAA 70759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433205994064130