Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq539 120 3e-22 seq15 111 2e-19 >seq539 Length=27760 Score = 120 bits (132), Expect = 3e-22 Identities = 199/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||||| | ||||| || ||||||| || | ||| ||||| || ||| Sbjct 7897 ATGTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTTTCCATCATGATCTGG 7838 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| || | ||| |||| | ||| || || || | ||| | || Sbjct 7837 AATCCATAGAAGCAGCGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGAAGG 7778 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || || || || || ||||| || ||||| || || || || | | Sbjct 7777 TTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAAATGAAGTAT 7718 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||| || || | | | || | ||||||| | ||||| || ||||||| ||| Sbjct 7717 TTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCTTTGGACAGATCGATCTCT 7658 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || ||||| || || |||||||| | ||| || Sbjct 7657 TCGGCCGTCCAGAAAGAGGCTTCAGCCTTCTTGTACATTTGCCAGAT 7611 >seq15 Length=125974 Score = 111 bits (122), Expect = 2e-19 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||||| | ||||| || ||||||| || | ||||||||| || ||| Sbjct 19518 ATGTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGG 19577 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| || | ||| |||| | ||| || || || | ||| | | Sbjct 19578 AATCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAG 19637 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || || || || || ||||| || ||||| || || || || | | Sbjct 19638 TTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTAT 19697 Query 93542 TTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||| || || | | | || | ||||||| | || || || ||||||| ||| Sbjct 19698 TTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCT 19757 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || ||||| || || || ||||| | ||| || Sbjct 19758 TCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACATTTGCCAAAT 19804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556699992522480