Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq599 136 8e-27 >seq599 Length=26268 Score = 136 bits (150), Expect = 8e-27 Identities = 436/671 (65%), Gaps = 9/671 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || Sbjct 20100 GTCGGCTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCTTGGCTCGTGCCATGCTCAGA 20159 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| ||||| | ||| Sbjct 20160 AAAGCCGACGTGCTTCTCCTCGACGAACCCACCAATCATCTCGACGTTGCCAACATCGCC 20219 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | |||||||| ||||||||| Sbjct 20220 TGGCTGGAGAACTACCTCAAGACTCACCCAAACATCACCAGTCTCATTGTTTCTCACGAC 20279 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 20280 TCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCTG 20339 Query 279936 TCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | || ||| ||||||||| |||| || |||| || || || || |||| Sbjct 20340 GC-ATGCTACAAGGGCAACCTGGCTGCCTTTGTGGAGGTCCGTCCCGAAGCCAAGTCCTA 20398 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGG 280054 ||| |||| | | ||| || | ||| | |||||| || || |||| || Sbjct 20399 CTACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTCCCTCCTCCGGGAATTCTCACAGG 20458 Query 280055 CATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAA 280114 | ||| ||| || || || ||||| | | ||| || | | || ||||| Sbjct 20459 CGTCAAGTCACAGACGCGAGCCATCATTCGCATGAGCAACGTGTCGTACACGTACCCCAA 20518 Query 280115 TGGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 |||||||| | || || || ||| || ||| | ||| || || || | Sbjct 20519 -GGCCCCAAAGCCCTC-GCTGTCCGAGGTCTCCTGTCAGCTGTCTCTGTCTTCCCGTGTG 20576 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 | ||||||| ||||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 20577 GCCATCATTGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGTTGCTTACCGGTGAA 20636 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 | | |||| || || ||||||||||||| |||| || | |||| || Sbjct 20637 AGCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCAAG 20696 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 ||||||||| | | ||| | |||| ||||| || | ||| || ||||| ||| | ||| Sbjct 20697 CAGCACGCTCTGGAGCACGTGGAGATGCACCTTGAGAAGACCCCGAACCAGTACCTCCAG 20756 Query 280350 TGGCGCTATGC 280360 ||||| ||||| Sbjct 20757 TGGCGATATGC 20767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027532566088782