Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq39 89.7 4e-13 >seq39 Length=88371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||| || ||||| ||||| ||| || | Sbjct 30990 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTTGAATCCTCG 30931 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || ||| ||||| || || | || |||| Sbjct 30930 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAG 30871 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| |||| ||||||||||| || || || || ||| |||| || |||| |||||| Sbjct 30870 CAGCGACTCATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 30811 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| |||||||| ||| | || | ||| | || || || Sbjct 30810 ATTCAGAAGGAGTCTACTCTGCATTTAGTCCTGCGTCTGCGGGGTGG 30764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358023967948108