Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq39 122 7e-23 seq13 122 7e-23 seq633 109 5e-19 seq1283 102 7e-17 >seq39 Length=88371 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || |||||||| | ||||| || || ||||| ||||| ||| Sbjct 30761 ATACCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCG 30820 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || || || |||||||| ||||||| ||||| ||||| || Sbjct 30821 GACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGG 30880 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| |||| | || | || || | |||||| Sbjct 30881 GGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCA 30940 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| ||| || || || |||||||| Sbjct 30941 ACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| | || | || || || || |||||||||||||| Sbjct 31290 ATACCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCA 31349 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || || || || || |||||| |||| |||||||| ||||| || Sbjct 31350 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGG 31409 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | |||| || || | || ||| Sbjct 31410 GGGATTCCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCG 31469 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | || | || |||||||| || || || || || || ||||||| Sbjct 31470 ACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATGG 31521 >seq13 Length=129688 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || ||||| | ||||| || || ||||| ||||| ||| Sbjct 70949 ATACCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCG 71008 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||| || || || |||||||| ||||||| ||||| ||||| || Sbjct 71009 GACAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGG 71068 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| |||||| |||| | || | || || | |||||| Sbjct 71069 GGAATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCG 71128 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| ||| || || || |||||||| Sbjct 71129 ACTTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 >seq633 Length=24846 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | || || ||||| | || || || || |||||||| ||||| Sbjct 19922 ACCGCCACGCAGGCGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 19981 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||| || || || |||||||| |||| || || || |||||||| || Sbjct 19982 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGG 20041 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| || ||||| ||||| || | | || | |||||||| || || || Sbjct 20042 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 20101 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || || || || ||||| || ||||||||||| Sbjct 20102 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 20149 >seq1283 Length=10397 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||||||| || || ||| || || || |||||||| || Sbjct 2728 TCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAG 2669 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || || || || |||||||| |||||||| || ||||| ||||| || | | Sbjct 2668 ATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 2609 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| || || || || | ||| | ||| || || || || ||||| || Sbjct 2608 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACG 2549 Query 114372 AAAATCTGCAT 114382 ||||||||||| Sbjct 2548 AAAATCTGCAT 2538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420016108796424