Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq428 98.7 9e-16 seq132 86.0 6e-12 >seq428 Length=32488 Score = 98.7 bits (108), Expect = 9e-16 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 20378 TGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATT 20437 || |||||||| | |||||| | | ||| | ||||||||||| ||| ||||| Sbjct 12292 TGGCAGGGCGGCAACGCCATGAGGTGTAGATCCCGTGCGTTCCACGCACTCATGATGATC 12351 Query 20438 CTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA-TTGGTCAAACCC 20496 | || |||| ||| || || || || || | | || || ||| ||||| | || Sbjct 12352 CGCCTGTCGTACGGCTTGTTCTTGATCTTGTCAATCACGT-CGGCAAGCTGGTCGACTCC 12410 Query 20497 CTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAA 20556 || ||| || ||||| | | || || |||||| | || |||||||||| ||| ||||| Sbjct 12411 CTTGCCGGTGTAGTCTGTCTTGGCATCGACGTACTCTGCGCCAAAGTGCCGCCATTGGAA 12470 Query 20557 ACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAA 20616 ||||| || ||||||| ||| || | | ||| | || || | | | ||||| Sbjct 12471 GCCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGTGAGACCCAGATTGTCGAGGAA 12530 Query 20617 CTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 ||| | ||| ||||| ||||||||| ||||| || Sbjct 12531 CTCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 12566 >seq132 Length=56651 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 20416 GTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAAT 20475 ||||||||||| ||| ||||| | | |||| ||| || || || || || | | Sbjct 28841 GTTCCACGCACTCATGATGATCCGCCGGTCGTACGGCTTGTTCTTGATCTTGTCAATCAC 28900 Query 20476 GTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGC 20535 || | | ||||| | |||| ||| || ||||| | | || || | |||| | || Sbjct 28901 GTCGGCGAGCTGGTCGACTCCCTTGCCGGTGTAGTCTGTCTTGGCATCGATGTACTCTGC 28960 Query 20536 CCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGC 20595 |||||||||| ||| ||||| ||||| || ||||||| ||| || | | ||| | Sbjct 28961 GCCAAAGTGCCGCCATTGGAAGCCGTACACGGGTCCCAGATCGCCTACTTCACGGTGTGT 29020 Query 20596 CAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 || || | | | |||||||| | ||| ||||| ||||||||| ||||| || Sbjct 29021 GAGACCCAGATTGTCGAGGAACTCGCGGGATCCATTGCCGTCCCATATTTTGACGCC 29077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441245342569680