Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq39 114 1e-20 seq13 113 5e-20 seq86 95.1 1e-14 seq864 91.5 1e-13 seq248 91.5 1e-13 >seq39 Length=88371 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || |||| ||| | || || || || ||||| ||||| || | Sbjct 30763 ACCACCCCGCAGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGA 30822 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || |||||||| || ||| | ||||| ||||||||||| || || Sbjct 30823 CAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 30882 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||||||| || | ||||| || || || Sbjct 30883 AATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAGGATTCAAC 30942 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| |||||||| || ||||| || ||||| Sbjct 30943 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 30990 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || |||||||||||||| | | ||||| |||| Sbjct 31308 AGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCC 31367 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || || ||||||||||| || || |||||||| || || Sbjct 31368 TCGAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCC 31427 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| | || || || | ||| | |||| Sbjct 31428 TGAATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTC 31487 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || ||||| |||||||| Sbjct 31488 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 31519 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| ||||| | || ||| || || |||||||| || Sbjct 30535 ACCACCTCGCAGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCT 30594 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| |||||||| |||||| |||| || || |||||||| ||||| Sbjct 30595 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGG 30654 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || || ||| || | |||||| | || || Sbjct 30655 GATACCCTCCTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGAC 30714 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || ||||| || || || ||||||||||| Sbjct 30715 TTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 30762 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| || || || ||||| || | || ||| || | ||| Sbjct 31007 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCT 31066 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || |||| | |||||||| || ||||| || || || || || Sbjct 31067 TCCAGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 31126 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | || | |||| Sbjct 31127 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 31186 Query 64412 TTGCCGGTCAAAGTTTTTAC 64431 || ||||||||||| || || Sbjct 31187 TTTCCGGTCAAAGTCTTGAC 31206 >seq13 Length=129688 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || || | ||||| |||| Sbjct 71496 AGGACGAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCGTCC 71555 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || | || || |||||||||||||| || ||||| || || || Sbjct 71556 TCAAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATTCCCTCCTTATCC 71615 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| | || || || | ||| | |||| Sbjct 71616 TGAATCTTCGACTTGACATTGTCAATGGTATCAGACGACTCGACCTCGAGAGTAATGGTC 71675 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || ||||| |||||||| Sbjct 71676 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 71707 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || | ||| | || || || || ||||| ||||| || | Sbjct 70951 ACCACCCCGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTCTGAATATTGTAGTCGGA 71010 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || |||||||| || ||| | ||||| ||||||||||| || || Sbjct 71011 CAAAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 71070 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||||||| || | |||||| | || || Sbjct 71071 AATGCCTTCCTTGTCTTGAATCTTAGCCTTTACATTATCGATTGTATCCGAAGATTCGAC 71130 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| |||||||| || ||||| || ||||| Sbjct 71131 TTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 71178 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| |||| | || ||| || || ||||| || || Sbjct 70723 ACCACCACGCAGACGAAGCACGAGATACAAAGTACTTTCCTTCTGGATGTTATAGTCGCT 70782 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| |||||||| |||||| |||| || || |||||||||||||| Sbjct 70783 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 70842 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || || ||| || | |||||| | || || Sbjct 70843 GATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAGAAGATTCGAC 70902 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || ||||| || || || ||||||||||| Sbjct 70903 TTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 70950 >seq86 Length=67758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | | ||| || |||| |||||||||||||| || |||| Sbjct 45591 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAAATC 45532 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||| || ||||| || || || ||||| ||||| ||| ||| || Sbjct 45531 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCCTTGACATTGTCG 45472 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | ||||||||| |||| || || |||||| Sbjct 45471 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAA 45412 >seq864 Length=18104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | | ||| || |||| |||||||||||||| || | || Sbjct 8492 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 8433 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | |||||||| || || ||||| || || || ||||| ||||| ||| ||| || Sbjct 8432 AATCGCTGCTGATCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 8373 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | ||||||||| |||| ||| || |||||| Sbjct 8372 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 8313 >seq248 Length=42843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| |||||||||||||| |||| || |||| || ||| | | || || | ||| Sbjct 23555 AGAGGCCAAGTTGCAAACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCA 23614 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || |||| || |||||||| ||||| |||||||| || || ||||||| || || Sbjct 23615 CAGATTAGAGCTGCGAATGGTTCCCAGATTTTTCTGGTTGCTCTTCCTGTTGCAGGCATC 23674 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||||||| || | ||| |||||||||| Sbjct 23675 TTTGTACAGCATAAAGGGGTTGCCCGTTTC 23704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499500515072880