Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq248 269 3e-67 seq258 244 1e-59 >seq248 Length=42843 Score = 269 bits (298), Expect = 3e-67 Identities = 1082/1680 (64%), Gaps = 74/1680 (4%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | | | Sbjct 24466 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTC 24407 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || | |||||||| || |||| ||| || || |||| || Sbjct 24406 GAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACAT--CG 24349 Query 93844 AATG--TTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGA 93901 || | ||||| | ||| | |||| |||| | ||| ||| | || | Sbjct 24348 AACGCGTTTTGGAGACTTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTA 24289 Query 93902 CCCTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCT-GATGAC 93956 | || |||||||| || ||||| ||| ||| ||||||| |||||||| | |||| Sbjct 24288 CACTCTTCAACGCTGGTACCCC----CCAATGTCAGCTGTCTTCCTGTTTCCTAGTTGAC 24233 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| |||| ||| ||| || | ||||| |||||| |||||| | ||||| Sbjct 24232 -ATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTC 24174 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || || || || ||||| | | |||||| | | ||||||| || || ||||| Sbjct 24173 CAAGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTACAT 24114 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 ||| ||||| || || ||||||||| || | || ||||| || |||||||||||| | Sbjct 24113 TGCCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTTCGCGTCTTCAACAACAC 24054 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || | ||||| |||||||| || | | | ||| | || || |||| ||||| Sbjct 24053 TGCCAGATACGTTGACCAGGGCGGCAATAAGCGACCTGGTGCATTTGCTATCTACCTCGA 23994 Query 94197 GCCCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 ||| |||||||| |||||| | ||||| | || ||||||||||||||||||| || Sbjct 23993 GCCTTGGCACGCAGACGTGTTTGACTTTC-TTGATTTGCGAAAGAACCACGGCAAGGAAG 23935 Query 94256 TGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCG 94315 | | || | ||||||||| ||||| ||| | ||||| ||||| ||||| |||| Sbjct 23934 AAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTTTTCATGAAGCGCG 23875 Query 94316 TCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACG 94375 |||| || ||| | |||| || | |||||||| || || || || ||| | || Sbjct 23874 TCGAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA-- 23817 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA--------ATCG-CAGGGCA 94426 ||| || || || || || | |||| ||||| | || ||||| Sbjct 23816 -TTG-CTATGGC-----GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCC 23764 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | | ||| ||| ||| |||||| ||| | ||| | || | ||| | Sbjct 23763 GTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGGCCCAGACCG 23704 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 | ||||| | |||| || ||| ||| || | |||| ||| ||||||| | Sbjct 23703 AAACGGGCAACCCCTTTATGCTGTACAAAGATGCCTGCAACAGGAAGAGCAACCAGAAAA 23644 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || || ||||| ||||||||||| ||||| | ||||| | | || | Sbjct 23643 ATCTGGGAACCATTCGCAGCTCTAATCTGTGCACGGAGATCATTGAGTACTGTGCCCCTG 23584 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| ||||||| || ||| ||| ||| | |||| | | ||||| ||| || Sbjct 23583 ATGAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGT-CGA-----CT 23530 Query 94667 AC-ACGTCTACTGCTTCG--TTC---GATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-G 94719 || | | | ||| || ||| | || | ||| ||| ||| ||| | Sbjct 23529 ACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAG---GTG-ACT------CAAGTG 23480 Query 94720 ATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAG 94779 | ||| ||||| |||| | | ||||| ||| |||||| | |||||| Sbjct 23479 GTCGTCCGTAACCTCAACAAGATCATCGATGTCAACCATTACCCCATTGAGGAGGCTCGC 23420 Query 94780 AACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTG 94839 ||| ||| || ||||| |||||||| | || || |||||| | || ||||| | Sbjct 23419 AACAGCAACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTT 23360 Query 94840 GTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTC 94899 | |||| |||||| ||| ||| ||| || | | || | | || ||| Sbjct 23359 CTTGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAAATTTTC 23300 Query 94900 GAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG 94959 || | |||||| ||| ||| ||| | || | | |||||| | | | ||| Sbjct 23299 GAGACCATTTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC--- 23243 Query 94960 CCACACGAATCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTC 95016 || || | ||| || || | ||| |||| || || ||||||||||| | Sbjct 23242 CCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAA---GGTGTTCTTCAGTTCGACATG 23186 Query 95017 TGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCA 95074 ||| ||| ||||| || | ||| || |||| || | | | || || | | Sbjct 23185 TGGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAACTTGAAGGAGCAGA--TCAAGC 23128 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | |||| | | ||| || |||| | || ||||||||||| ||||| || |||| | Sbjct 23127 AGCACGATATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCTACCTCGCAAA 23068 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 |||| || ||||| |||| || || || | ||| |||||| | ||| | | || || Sbjct 23067 TCCTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCT 23008 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGG 95252 | || || ||||||| ||| ||||| ||||| ||| || |||| | |||| Sbjct 23007 TGGCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCT--CGTCGATATGGG 22950 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | | ||| ||| | ||||||| | | || ||||| ||| | |||||||| Sbjct 22949 TCTTTGGTCTGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACAT 22890 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || | || || | ||||||||||| ||||||||||| || |||||||| | ||||| Sbjct 22889 TCCCAATATCCCCGCCGACATCAAGGCTCTCTACAAGACTGTTTGGGAGATTTCTCAGCG 22830 >seq258 Length=42171 Score = 244 bits (270), Expect = 1e-59 Identities = 1096/1717 (64%), Gaps = 56/1717 (3%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | || | Sbjct 14056 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATTGTC 14115 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || | |||||||| ||| |||| ||| || || | || | Sbjct 14116 GAGCGACCCCAGCACATGATTATGCGCGTTGCCGTCGGTATTTGGGGAGACAATATTGAG 14175 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 |||||| | | | | |||| |||| | ||| ||| | || || Sbjct 14176 CGCGTTTTGGAGACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACA 14235 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCTGAT-GACGA 93958 || |||||||| || ||||| ||| ||| ||||||| |||||||| | ||| | Sbjct 14236 CTCTTCAACGCTGGTACCCC----CCAATGTCAGCTGTCTTCCTGTTTCCTAGTCGAC-A 14290 Query 93959 ACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA 94018 |||| |||| ||| ||| || | ||||| |||||| ||||| | ||||| | Sbjct 14291 TGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACGTGTGCCATGATCTCCA 14350 Query 94019 AATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCC 94078 | || || |||||||| | | |||||| | | ||||| | || || ||||| Sbjct 14351 AGATGGCTGGTGGAATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTACATTG 14410 Query 94079 GCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGG 94138 ||| ||||| || || ||||||||| || | || |||||||| |||||||||||| | | Sbjct 14411 CCGGCACCAACGGTACATCCAACGGCATCATTCCCATGCTCCGCGTCTTCAACAACACTG 14470 Query 94139 CGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGC 94198 | | ||||| |||||||| ||| | | | ||| | || || |||| ||||||| Sbjct 14471 CCAGATACGTTGACCAGGGCGGTAACAAGCGACCTGGTGCATTTGCCATCTACCTCGAGC 14530 Query 94199 CCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 | |||||||| |||||| | ||||| | || |||||||||||||||| || || Sbjct 14531 CTTGGCACGCAGACGTGTTCGACTTTC-TTGATTTGCGAAAGAACCACGGTAAGGAAGAA 14589 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | ||||||||| ||||| ||| | ||||| || || ||||| |||||| Sbjct 14590 AATCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTC 14649 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 || || ||| | |||| || | |||||||| || || || || ||| | || | Sbjct 14650 GAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCTGGCCTGGCTGA---T 14706 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCG---------CAGGGCAAG 94428 || || || || || || | |||| |||||| | ||||| Sbjct 14707 TG-CTATGGC-----GAGGAATTTGAGGCTCTCTACGAAAAGTATGAGCGTGAGGGCCGT 14760 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | ||| ||| ||| |||||| ||| | ||| | || ||| || Sbjct 14761 GGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACCGAA 14820 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| | |||| || ||| |||||| | |||| ||| ||||||| || || Sbjct 14821 ACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAAC 14880 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || ||||| || |||||||| ||||| | ||||| | | || || Sbjct 14881 CTGGGAACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCCGAT 14940 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| ||||||| || ||| ||| ||| | |||| | | ||||| ||| |||| Sbjct 14941 GAGGTTGCTGTTTGCAACTTGGCCTCTCTTGCCCTGCCTGCCTTCGT-CGA-----CTAC 14994 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG 94728 | | || | | ||| | || |||| | || | | | | ||| Sbjct 14995 A--AAGAAGGCCGC-TACGACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGT 15051 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||| |||| | | || || ||| |||||| | |||||| ||| ||| Sbjct 15052 AACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAAC 15111 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || ||||| |||||||| | || || |||||| | || ||||| | | || Sbjct 15112 ATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCTGACGCTTTTCTTGCTCTG 15171 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || |||||| ||| ||| ||| || | | || | | || ||||| | ||| Sbjct 15172 CGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATC 15231 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 || ||| ||| ||| | || | | |||||| | | | ||| || || Sbjct 15232 TACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC---CCCTACTCT 15288 Query 94969 TCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTG 95025 | ||| || || | ||| |||| || ||| |||| |||||| | ||| ||| Sbjct 15289 ACCTTCAAGGGCTCTCCCGCCTCGGAA---GGTATTCTTCAATTCGACATGTGGAATGTC 15345 Query 95026 AAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 ||||| || | | | || |||| || || | | || || | | | |||||| Sbjct 15346 AAGCCTTCTGAGTTATGGGAGTGGGACAATCTGAAGGAGCAGA--TCAAGGAGCACGGTA 15403 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| || |||| | || ||||||||||| || || || |||| || || || | Sbjct 15404 TTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCATCGACCTCGCAAATTCTGGGTA 15463 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 |||| |||| || || || | ||| |||||| | ||| | | || || | || || | Sbjct 15464 ACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTG 15523 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGT 95262 |||||| ||| ||||| ||||| ||| || | || | ||||| | ||| | Sbjct 15524 AATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGAC-ATGGGTCTCTGGTCT 15582 Query 95263 GACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATA 95322 || | ||||||| | | || || || ||| | ||||||||||| | || Sbjct 15583 GATGCCATGAAGAACCGCATCATTGCCGAGAATGGTTCCATTCAGAACATCCCCAATATC 15642 Query 95323 CCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG-CGTGATACT 95381 || | ||||||||||| ||||| ||||| || |||||||| | ||||| | || || | Sbjct 15643 CCCGCCGACATCAAGGCTCTCTATAAGACTGTTTGGGAGATTTCTCAGCGTCATGTTA-T 15701 Query 95382 CGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | | || |||| ||||| |||| ||| |||| Sbjct 15702 CCAGATGGCCGCCGATCGCGGTGCCTTTATCGACCAG 15738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494580336307920