Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq258 111 3e-19 seq248 105 1e-17 >seq258 Length=42171 Score = 111 bits (122), Expect = 3e-19 Identities = 438/676 (65%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 15884 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 15827 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 15826 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 15767 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||| | ||| || |||||| |||||||| |||||| || ||||| |||||| Sbjct 15766 CCTTCATGTGGACGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCGCGATCGGCGGCC 15708 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | ||||| ||| ||||||||||| || ||||| | | | || ||| Sbjct 15707 ATCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTATAGAGAGCCTTGATGTCG 15648 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | || | | || ||| || || || || ||||| || | | || || | Sbjct 15647 GCGGGGATAT-TGGGGATGTTCTGAATGGAACCATTCTCGGCAATGATGCGGTTCTTCAT 15589 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 15588 GGCATCAGACCAGAGACCCATGTCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTG 15529 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 15528 GAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTC 15469 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||| || | ||| || | ||| || |||||||||||||| || |||| ||||| Sbjct 15468 ATTGTTACCCAGAATTTGCGAGGTCGATGCGGTGGGCATGGGAGCGAGCAGCAACGAGTT 15409 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGG 204377 ||| | ||||| | | || |||| ||||||| | ||| || | | || | Sbjct 15408 GCGAATACCGTGCTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCATAACTCAGAAG 15350 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || |||||||||||| |||| || |||| | | || ||||||| | | Sbjct 15349 GCTTGACATTCCACATGTCGAATTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGG 15290 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 | | || || | ||||| ||||||| ||||| | || ||| | ||| | Sbjct 15289 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAGA 15230 Query 204498 TGGTCTCAAAGATCTG 204513 ||||||| |||||||| Sbjct 15229 TGGTCTCGAAGATCTG 15214 Score = 105 bits (116), Expect = 1e-17 Identities = 416/639 (65%), Gaps = 18/639 (3%) Strand=Plus/Minus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCT--GATCGTCTTTCACCCTC 205165 ||| || || || | ||||||||||| || | ||| ||| | || | || || | | Sbjct 14700 CAGGCCAGGGCACTCGTTGGGACACATGAGGGTCCA-ATCCCCGTTCTT-TTCGACGCGC 14643 Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 | ||| || || || ||||||||| | || || || || || | | || | || Sbjct 14642 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGATTTTCTTCC 14583 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAA 205284 | || |||||||| ||| || || ||| || | | ||| |||||||| ||||| | Sbjct 14582 TTACCGTGGTTCTTTCGCAAATCAAGA-AAGTCGAACACGTCTGCGTGCCAAGGCTCGAG 14524 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCA---TGCGAGTCAT 205341 | | ||| | ||| || || | |||||| || |||||||| || || ||| | Sbjct 14523 GTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCCCTGGTCAACGTATCTGGCAGTGTT 14464 Query 205342 CGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGAT 205401 |||||| || || ||||| || | | ||||||| || ||||| |||| | || Sbjct 14463 ---GTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGATGTACCGTTGGTGCCGGCAAT 14407 Query 205402 GGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 | ||||| ||| | | | | || | | ||| || || |||| ||||| Sbjct 14406 GTAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATTCCACCAGCCATCTTGGA 14347 Query 205462 GATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 |||| ||| ||| ||||| |||||| |||||| || | ||| |||||| || || Sbjct 14346 GATCATGGCACACGTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCA-TG 14289 Query 205521 TC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGG-TGCCCGCGTGGAAGAGCGTGGG 205578 || || || | || |||| ||||| | || | || | || |||| |||||| || || Sbjct 14288 TCGACTAGGAAACAGGAAGACAGCT-GACATTGGGGGGTACCAGCGTTGAAGAGTGTAGG 14230 Query 205579 GCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAG 205638 ||||||| ||||| |||| | || ||||||||||| |||| ||| | Sbjct 14229 TGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTCTCCAAAACGCGCTCAAT 14170 Query 205639 ATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCAC 205698 || | || |||||| | ||| | | ||| | | ||| || |||| ||| | | Sbjct 14169 ATTGTCTCCCCAAATACCGACGGCAACGCGCATAATCATGTGCTGGGGTCGCTCGACAAT 14110 Query 205699 CCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 | | |||| | ||||| ||||| | |||||| || || Sbjct 14109 CTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGT 14071 >seq248 Length=42843 Score = 105 bits (116), Expect = 1e-17 Identities = 437/676 (65%), Gaps = 10/676 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 22638 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 22695 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 22696 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 22755 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 | |||||||| ||| || |||||| |||||||| |||| | ||||| ||||||| Sbjct 22756 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAAGCACCGCGATCGGCGGCCA 22815 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | ||||| ||| ||||||||||| || |||||| | | | || ||| Sbjct 22816 TCTGGATAACATGACGCTGAGAAATCTCCCAAACAGTCTTGTAGAGAGCCTTGATGTCGG 22875 Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || | || | | || ||| || || ||||| ||||| || | | || || | Sbjct 22876 CGGGGATAT-TGGGAATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 22934 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| | |||| || || ||| | || |||||||| || ||| Sbjct 22935 GCATCAGACCAAAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGG 22994 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 22995 AATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCA 23054 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 ||||| || | || || | ||| ||| |||||||||||||| || |||| |||||| Sbjct 23055 TTGTTACCCAGGATTTGCGAGGTAGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTG 23114 Query 204320 CGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGT-CCAGTCGTGCATCGCACTGG 204377 || | | ||| | | || |||| ||||| || || ||| || || | || | Sbjct 23115 CGAATATCGTGCTGCTTGA-TCTGCTCCTTCA-AGTTGTCCCACTCCCACAACTCAGAAG 23172 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || ||||||||||||||||| | |||| | | || ||||||| | | Sbjct 23173 GCTTGACATTCCACATGTCGAACTGAAGAACACCTTCCGAGGCGGGAGAGCCCTTGAAGG 23232 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 | | || || | ||||| ||||||| ||||| | || ||| | ||| | Sbjct 23233 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAAA 23292 Query 204498 TGGTCTCAAAGATCTG 204513 ||||||| || || || Sbjct 23293 TGGTCTCGAAAATTTG 23308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794925579057120