Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 168 7e-37 seq539 158 1e-33 seq633 143 3e-29 seq1283 131 2e-25 seq86 114 1e-20 seq864 102 8e-17 seq13 102 8e-17 seq39 89.7 5e-13 >seq15 Length=125974 Score = 168 bits (186), Expect = 7e-37 Identities = 362/524 (69%), Gaps = 24/524 (5%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| ||||||||||| || || ||||| ||||| || || || || | Sbjct 18889 CATAACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAAAAGTTTGTCTTGCCACC 18948 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 |||||||||| | ||| ||||| ||||||||||| || ||||| ||| | | Sbjct 18949 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTT-AC 19007 Query 132711 CAGGT-CGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 || || | || | || | ||||| || || || || |||||| ||| || | || Sbjct 19008 CAAGTGCAACCAATAGACGATCGGCGACAAATTCAATATATTGCTTCATTAGTGTGGCGT 19067 Query 132769 TTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 | | | || || ||| |||| |||||| || ||||| | ||| |||||| ||| | || Sbjct 19068 TCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAAC 19125 Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGC--GCCGCGCTCGGCCGTTGCACCAAATGC 132882 |||||||||| ||| ||| ||| || || | |||||| ||| | |||| Sbjct 19126 AGCGTCGGTGATGATATCCTGGATAATTTGCTTGCTG-GCTCGG----TGCTTAAGATGC 19180 Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 | || || || ||||| || ||||| ||||| || | ||| || |||||||| Sbjct 19181 GAGTGCAACAGACATGCAAAATCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTA 19240 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||| || | ||||||||| || || || || |||||||| || || || || || | Sbjct 19241 GAGAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAAT--CGACGCAAAGG 19298 Query 133003 C-CCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG 133060 | ||| ||||||| |||||| || || ||||||||||||| ||||| | |||| ||| Sbjct 19299 CACCGCTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGG 19358 Query 133061 CTTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 || ||| ||| ||||| || | ||||| || || |||| Sbjct 19359 AATCCTTGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTT 19400 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| | ||||| ||| || || |||| ||||| | |||||||| ||| || || Sbjct 19520 GTAGCTATCGATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAA 19579 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||||||||| | || || Sbjct 19580 TCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTT 19639 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| |||||||| || || || || |||| | ||| |||||| | Sbjct 19640 TTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTT 19699 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| || | ||| ||| || |||||||||||| || | ||| || Sbjct 19700 CTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTC 19759 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||||| || || ||||| Sbjct 19760 GGCCGTCCAGAAAGAGGCTTCGGCCTTCTTATACAT 19795 >seq539 Length=27760 Score = 158 bits (174), Expect = 1e-33 Identities = 364/536 (68%), Gaps = 22/536 (4%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| ||||||||||| || || ||||| || || || || || || | Sbjct 8529 CATGACGCCAGCCTTTTGATATTCTCCAACTCGCTTCTCGAAGAAGTTTGTCTTGCCACC 8470 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 |||||||||| ||| ||||| ||||||||||| || ||||| ||| || | Sbjct 8469 CAAGGAAATGTTTTCCATGAAATCGAAGGGGTTGGCGGTTTTGTATACCTTTTCGTTACC 8410 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 | || | || | || | ||||| || || || ||||||||| ||| || | || Sbjct 8409 AAGAG--CAACCAATAGGCGATCGGCGACAAATTCAATGTATTGCTTCATTAGTGTGGCG 8352 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | | | || || ||| |||| |||||| || ||||| | ||| |||||| ||| | | Sbjct 8351 TTCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAA 8294 Query 132827 CCGCGTCGGTGACGATTTCCC---TAACGCGC--GCCGCGCTCGGCCGTTGCACCAAATG 132881 | |||||||||| || ||| |||| || || | |||||| ||| | ||| Sbjct 8293 CAGCGTCGGTGATAATATCCTGAATAACTTGCTTGCTG-GCTCGG----TGCTTTAGATG 8239 Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 | | || || || |||||||| ||||| ||||| || | ||| || |||||||| Sbjct 8238 CGAGTGCAACAGACAGGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTT 8179 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 ||| || | || ||||| || || || || |||||||| || || | ||| || Sbjct 8178 AGAGAAGGTGAGACCTGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGC 8119 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || ||||||| ||||| || || ||||||||||||| ||||| | |||| ||| Sbjct 8118 ACCGCTGAAGAAGATACCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGA 8059 Query 133062 TTCTTTG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || ||| ||| ||||| || | ||||| || || |||| | || ||| || Sbjct 8058 ATCCTTGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTTTTCGGATGCAGGG 8005 >seq633 Length=24846 Score = 143 bits (158), Expect = 3e-29 Identities = 174/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 20152 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 20093 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 20092 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 20034 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | || || || ||||| || || | |||||||| | |||||| Sbjct 20033 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 19974 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| ||| || ||||||||||||||||| || | ||||| Sbjct 19973 CAACATCCAGAAGGAGAGC-ACCCTGCATTTGGTGCTGCGCCTGCGTGGCGG 19923 >seq1283 Length=10397 Score = 131 bits (144), Expect = 2e-25 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 2535 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2594 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 2595 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 2653 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | || || || ||||| || || | |||||| | | |||||| Sbjct 2654 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCTTGAGCGACTA 2713 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || ||||| ||||||||||| Sbjct 2714 CAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 2752 >seq86 Length=67758 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 45413 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 45472 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || | ||||||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 45473 GACAATGTCAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 45532 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 45533 ATTTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 45592 Query 38433 G 38433 | Sbjct 45593 G 45593 >seq864 Length=18104 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 8314 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 8373 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| ||||| |||||| | || || ||||| | Sbjct 8374 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGATCAGCAGCGATTG 8433 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 8434 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 8493 Query 38433 G 38433 | Sbjct 8494 G 8494 >seq13 Length=129688 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| || |||| |||||| | | Sbjct 71707 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 71648 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | || || |||||||| ||| ||||||| Sbjct 71647 GATACCATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCCCCCGACCAG 71588 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 71587 CAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCTGACTACAAC 71528 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 71527 ATCCAGAAGGA 71517 >seq39 Length=88371 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || || ||| | || ||||| | | Sbjct 30762 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTCGAATCTTCT 30703 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || || | || || ||||| || || | ||||| Sbjct 30702 GATACCATCGACAATGTCAAATCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAG 30643 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || |||||||| |||| ||||| || | |||||||||| Sbjct 30642 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGACTACAAC 30583 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || ||||| | ||||| ||| || |||| || Sbjct 30582 ATCCAGAAGGAAAGCACTTTGCATCTCGTGCTTCGTCTGCGAGGTGG 30536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500028362599680