Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq891 199 5e-46 seq867 199 5e-46 seq805 145 1e-29 >seq891 Length=17630 Score = 199 bits (220), Expect = 5e-46 Identities = 537/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 11204 TCATCCTCCTCCTTGTACTTCTCAGCTTCCGACAACATGCGCTCGATGTCTTCTTTGGAT 11263 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||| | | |||| || || Sbjct 11264 AGACGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCGGTGCCCTTCTCAACA 11323 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| ||||| | ||| || | || | ||| || || | Sbjct 11324 GCAGACACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCAATCTGAGGAACA 11383 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | || |||| ||| | Sbjct 11384 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATTAGGTTGTTGTCCTTG 11443 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | ||| |||| | || || || || Sbjct 11444 GTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCGGGCTGGTTGTCAGAGAAG 11503 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | |||||| || || || | ||||| | | ||| Sbjct 11504 GTCGAGAAAACCTCAGACTTCTTGGTTGGAATGGTTGTGTTACGAGGAATGAGCTTCGTC 11563 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || || | || ||||||| ||| | ||||| | | || | Sbjct 11564 ATCATTCCACCGGCGGTCTCAATACCCAGAGACAAAGGCGCGACGTCAAGCAACAAGATT 11623 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | ||| | | ||||| | | ||| || || ||||| | || ||| Sbjct 11624 TCGTTGGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 11683 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| |||||||| ||||| || | || || | |||||||||||||| || || Sbjct 11684 TACGCGACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTACCGTTAAAGTAGTCG 11743 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || ||| || || || || || ||||| ||||| || || |||| Sbjct 11744 GAGATGAGTTTCTGGATTCGGGGAATACGGGTGGAACCACCAACCAAGACAATCTCATGA 11803 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || |||||||| | || Sbjct 11804 ACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAGGCTGGATGGTGGAG 11863 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| ||| || || || ||||| || |||||||| | || |||||||| Sbjct 11864 CGGAAAAGATCCTGACAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 11923 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| |||||||| ||||| || || || || | ||||| | || ||| Sbjct 11924 ATACCCTCGAATAGAGAATCAATCTCAATCGTAGTCTGAGCTGCAGAAGAGAGGGTGCGC 11983 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 11984 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 12024 >seq867 Length=18020 Score = 199 bits (220), Expect = 5e-46 Identities = 492/741 (66%), Gaps = 14/741 (2%) Strand=Plus/Plus Query 7406 TTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATC 7464 ||||||||||| || || || || || | | ||||| || || | |||||| || Sbjct 12345 TTCTTATGTTTGCGCTTGAATTCGTTGACA-AAGTGGTTAACAAGGCGGTTATCGAAGTC 12403 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 |||||||||||||| || || || ||||| | ||||| || |||||||| | ||||| Sbjct 12404 CTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCCTCCTCAAT 12463 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGT 7581 | | | || ||||| || ||||||||||| || || ||||| || || || | Sbjct 12464 TGTGAGGAGAGACACATCGAAGGTACCACCACCTAGATCGAAAATCAGGACATTGCGCTC 12523 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 | | ||| |||| ||| ||||||||||| || ||||| || || || || || || || Sbjct 12524 ACCCTCGACTTT---CTTGTCGAGACCGTAGGCAATAGCGGCGGCAGTAGGCTCGTTGAT 12580 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 |||||||| ||| || || |||||| | || || || || || || || || || Sbjct 12581 GATACGAAGGACGTTGAGTCCGGCAATACGACCGGCGTCCTTGGTAGCCTGCCGCTGAGA 12640 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| |||||||| ||||| || ||||| |||| || ||| | || | | | Sbjct 12641 GTCGTTGAAGTAGGCGGGGACAGTGACGACAGCGTTCGGGACCGGTGTGCCCAAAAAGCC 12700 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || || || || ||| ||| | || | ||| || || || || |||| | || | Sbjct 12701 CTCGGCAATCTCGCGCATCTTGATGAGGATCATGGAAGATATTTCCTCAGGTGTGAATTC 12760 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 ||| ||| || || || || || | | || ||||| | | || || Sbjct 12761 CTTCTCTTCGCCTTTGAATTCGACCTTGACCAAAGGTTTGCCTTGTTTTTC---AATCAC 12817 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | | | |||||||| | ||||||| | | || ||||| | || || Sbjct 12818 CTTGAAGGGAAAGTGCTTCATATCAGCCTGGACCTCTGGATCGTCGAACTTGCGGCCAAT 12877 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 | |||||| || || || || ||||| | |||||||| || || ||||| || || Sbjct 12878 CAAACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATAGCGACCTGATTCTTGGCAGC 12937 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 || || || ||||| || | || | || ||||| | |||||||| ||||| || Sbjct 12938 ATCGCCAATCAGACGCTC---GGTGTCATTGAATGCGACAAAAGATGGGGTAGTTCGGTT 12994 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || || || || | ||||||||| ||||| | | ||| | ||||| || || Sbjct 12995 ACCCTGCTCATTGGGAATAATTTCGCATCGGTCATCGCGATAGATAGCCACGCAAGAGTA 13054 Query 8122 CGTTGTTCCTAAATCAATACC 8142 ||| || || || || ||||| Sbjct 13055 CGTGGTACCCAAGTCGATACC 13075 Score = 185 bits (204), Expect = 1e-41 Identities = 534/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 11450 TCATCCTCCTCCTTGTACTTCTCGGCTTCAGACAGCATACGCTCGATGTCTTCTTTGGAT 11509 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||||| | |||| || | Sbjct 11510 AGACGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCCGTGCCCTTTTCAACG 11569 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| || || | ||| || | || | ||| || || | Sbjct 11570 GCAGAGACATTCATGATACCATTGGCGTCGAGATCAAAGGTAACTTCAATCTGAGGAACA 11629 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | | |||| ||| | Sbjct 11630 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATCAGGTTGTTGTCCTTG 11689 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | || |||| |||| || || || Sbjct 11690 GTGCGCTGTCGCTCGCCCTCAAAGACCTGGATGAGCACCCCAGGCTGGTTGTCAGAAAAG 11749 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | || ||||| | |||||| || || || | ||||||| | ||| Sbjct 11750 GTCGAGAAAACTTCGGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATAAGCTTCGTC 11809 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || |||| || ||||||| ||| | ||||| | | || | Sbjct 11810 ATCATTCCACCGGCGGTCTCGATACCCAGAGACAAAGGAGCGACGTCAAGCAACAAGATT 11869 Query 6989 TCTTGAACAGATTCG---TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | | ||| | | ||||| | | ||| || || ||||| | || ||| Sbjct 11870 TCGTTAGTAGACTTGGAAGAAGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 11929 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || | ||||| ||||| || || || Sbjct 11930 TACGCAACAGCCTCATCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTGAAGTAGTCG 11989 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || || || ||||| || || ||||| ||||| || || |||| Sbjct 11990 GAGATGAGTTTCTGGATACGGGGAATTCGGGTGGAACCACCAACCAAGACAATCTCATGA 12049 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || |||||||| | || Sbjct 12050 ACTTGAGATTTGTCAATCTTGGCGTCAGTGAGAACACGGTCGACAGGCTGGATGGTGGAT 12109 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || || || ||||| || |||||||| | || |||||||| Sbjct 12110 CGGAAAAGATCCTGGCAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 12169 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| || ||||| ||||| || || || || | ||||| | || ||| Sbjct 12170 ATACCCTCGAATAGGGAGTCAATCTCAATCGTAGTCTGAGCTGCAGAAGAGAGGGTGCGC 12229 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 12230 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 12270 >seq805 Length=19659 Score = 145 bits (160), Expect = 1e-29 Identities = 497/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || ||||| | || ||||| || || |||||||||||||| || | || | || | Sbjct 18576 GCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCTTC 18635 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 ||||||| ||| |||| || | | | || || || || || || || || ||||| Sbjct 18636 TTACCGTCAAAGAAATCGGACAGAAGCTTCTGGATCTTGGGAATACGGGTGGAACCACCA 18695 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 ||||| ||||| || | || || || || ||||| | || || | || Sbjct 18696 ACCAAGACGATCTCGTCAACCTTGGACTTCTCGATGCCAGCATCCTTGAGAACCTGAGCG 18755 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTC----CATACACAGTTCCTCAAAACGTGCACG 7263 ||||| || | | | || ||| | | | || ||| | || || || ||||| Sbjct 18756 ACAGGCTCAAGGG--TGCCAGAGAAAGCCTTGGCGTTCA-AGT-CTTCGAACCGAGCACG 18811 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 |||||||| | ||| || | || ||| | | || ||||| || ||||| | || Sbjct 18812 GGTAATGGTCATGGTGAAGTCCTCACCATCGAAGAGGGAGTCAATCTCGATGGTGGCCTG 18871 Query 7324 TGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || || ||||| || ||||| || || ||||| | | || ||| Sbjct 18872 GGCACCGCTG--GACAAGGTACGCTTGGCACGCTCGCAAGCAGTTCGAAGTCTTCGCAGG 18929 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-G 7440 ||||| | | |||| ||||| ||||| || || | ||||||| | ||| | Sbjct 18930 GCACGGGCATCACCGCTCATATCCTTCTTGGACTTGCGGGTGAACTCTTTCTTGCAGTAG 18989 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||| ||| | | |||||||| | |||||||| || || || || ||||| || || Sbjct 18990 TCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAGATGGGTGTCACCAGCGGTAGCCTT 19048 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||| || | ||||| | | || ||||| || ||||||||||| || Sbjct 19049 GACAGTGAAGACACCACCCTGGATGTTGAGAAGAGACACATCGAAAGTACCACCACCAAG 19108 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACCGTACGCGAT 7617 || | || || ||||| || | || ||| | |||||||| || || Sbjct 19109 ATCGTAGATCAGGACGTTGCGCTCCTTCTCAGACTTGCCAGAGCCCAGACCGTAGGCAAT 19168 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || ||||| |||| || |||| || || |||| ||| | | | Sbjct 19169 GGCGGCAGCGGTGGGCTCGTTAATGATACGGAGGACA-TTGAGACCAGAAATGGCACCGG 19227 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 19228 CGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCT 19287 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | ||| ||||| ||||| | | || || || || ||||| Sbjct 19288 TCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCCTTCAT 19330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634949389525680