Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq39 159 8e-34 seq13 159 8e-34 seq1283 150 4e-31 seq633 150 4e-31 >seq39 Length=88371 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| || ||||||||||| |||| | ||||| ||||| ||||||||| Sbjct 30788 TGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGC 30847 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||| || Sbjct 30848 TTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTA 30907 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || || ||||| ||| ||||| | |||| ||||| || ||| Sbjct 30908 GACTTTACATTATCGATCGTATCCGAGGATTCAACTTCCAATGTAATAGTCTTGCCAGTC 30967 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 30968 AAAGTCTTGACGAAGATCTGCAT 30990 Score = 143 bits (158), Expect = 6e-29 Identities = 158/209 (76%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||| || || || |||||||| |||| || || | |||||||| Sbjct 31010 ACGAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCC 31069 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||| || | ||| || || || ||||| || || || || || ||| Sbjct 31070 AGCTGCTTACCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGA 31129 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || || || |||||||| | |||||| Sbjct 31130 ATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTT 31189 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || ||| |||||| Sbjct 31190 CCGGTCAAAGTCTTGAC-AACTATTGCAT 31217 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| |||||||| || ||||| || ||||| |||||||| | |||||| | || || || Sbjct 31310 AACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTC 31369 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || || || ||||| || || || ||||| ||||| || Sbjct 31370 GAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTG 31429 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| || ||||| || || || || || || || |||| ||||| Sbjct 31430 AATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTT 31489 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 31490 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 31519 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || | |||| || || || || ||||| ||| || || | || ||||| Sbjct 30554 ACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCC 30613 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||||||||| ||||| ||||| || || || || || ||| Sbjct 30614 AGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGA 30673 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| || ||| ||| ||||| | ||||| |||||| Sbjct 30674 ATCTTGGATTTGACATTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTT 30733 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | |||||| Sbjct 30734 CCAGTCAAGGTCTTGACAAAAATTTGCAT 30762 >seq13 Length=129688 Score = 159 bits (176), Expect = 8e-34 Identities = 154/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| || ||||||||||| |||| | ||||| ||||| |||||||||||||| Sbjct 70981 AGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTACC 71040 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| ||||| || ||||| || ||||||||||| ||||||||||| || ||| Sbjct 71041 AGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTT 71100 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || |||||| ||| ||||| | || | ||||| || |||||||| Sbjct 71101 TACATTATCGATTGTATCCGAAGATTCGACTTCCAATGTGATAGTCTTGCCAGTCAAAGT 71160 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 71161 CTTGACGAAGATCTGCAT 71178 Score = 159 bits (176), Expect = 8e-34 Identities = 162/210 (77%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||||||||| || || || |||||||| ||||| || || | |||||||| Sbjct 71198 ACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACGACCATCTTCC 71257 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | ||| || || || |||||||| ||||| || || ||| Sbjct 71258 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTCCTTATCCTGA 71317 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || |||||||| || || || || ||||| | |||||| Sbjct 71318 ATCTTCGATTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTT 71377 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| || || ||| | ||||| Sbjct 71378 CCAGTCAAAGTCTTGAC-AACTGTGGCATT 71406 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || || || || || || ||| || || | || ||||| |||||||| || || || Sbjct 70760 TCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 70819 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||||||||| ||||| ||||| || || || || || ||||| || ||||| | Sbjct 70820 ATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTGACAGTG 70879 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || ||||| || ||| ||| ||||| | ||| | |||||||| ||||| || || || Sbjct 70880 TCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTCTTGACA 70939 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 70940 AAAATTTGCAT 70950 >seq1283 Length=10397 Score = 150 bits (166), Expect = 4e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || ||| ||| || || || ||||| ||| |||| || | ||||| ||||||| Sbjct 2741 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCGGCCATCCTCGAGCT 2683 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || |||||||||||||| ||||| || |||||||| || ||||| || || | Sbjct 2682 GCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 2623 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||||||||| || |||||||| ||| ||||| |||||||| | |||||| || | Sbjct 2622 TGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCG 2563 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 | | ||||| ||||| | ||||| Sbjct 2562 TGAGGGTTTTGACGAAAATCTGCAT 2538 >seq633 Length=24846 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||| ||| || || || ||||| ||| || || | ||||| ||||||||| Sbjct 19947 TGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGC 20006 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||||||||| ||||| || |||||||| || ||||| || || || Sbjct 20007 TTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 20066 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || |||||||| ||| ||||| |||||||| | |||||| || || Sbjct 20067 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTG 20126 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 20127 AGGGTTTTGACGAAAATCTGCAT 20149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109153199687234