Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 100 2e-16 seq1283 98.7 6e-16 seq39 96.9 2e-15 seq633 95.1 8e-15 >seq13 Length=129688 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 || ||||| ||||| ||||||||||| || | || | || |||||||| |||||| Sbjct 70754 GTACTTTCCTTCTGGATGTTATAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 70813 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || |||||||||||||| | || | |||||||| || |||||| |||| Sbjct 70814 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGAATCTTGGATTTG 70873 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | | || | ||| | || || || | ||| || || ||||| || | ||| Sbjct 70874 ACAGTGTCGATGGTATCAGAAGATTCGACTTCCAAGGTGATAGTCTTTCCAGTCAAGGTC 70933 Query 34965 TTCACAAAGATCTGCATA 34982 || ||||| || |||||| Sbjct 70934 TTGACAAAAATTTGCATA 70951 >seq1283 Length=10397 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||||| || ||||| ||||| ||||| | |||| | || |||| || Sbjct 2746 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGGCCATCCTC 2688 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || |||||||||||||| | || | ||||||||||| Sbjct 2687 GAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 2628 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 2627 GATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 2568 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || || || || |||||||| || Sbjct 2567 CCCCGTGAGGGTTTTGACGAAAATCTGCATCTT 2535 >seq39 Length=88371 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| ||||| ||||| ||||| || | || | || |||||||| |||||| Sbjct 30566 GTGCTTTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 30625 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || |||||||||||||| | || | |||||||| || |||||| |||| Sbjct 30626 GCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGATTTG 30685 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | || || || | ||| || || ||||| || | Sbjct 30686 AC--AT--TGTCGATGGTATCAGAAGATTCGACTTCCAAGGTAATAGTCTTTCCAGTCAA 30741 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || |||||| Sbjct 30742 GGTCTTGACAAAAATTTGCATA 30763 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || ||||||||||| || || ||||| | || | || || Sbjct 31310 AACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTC 31369 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || ||||| || |||||||| | || | || |||||||| Sbjct 31370 GAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTG 31429 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| ||||| | || | ||| | ||| || |||| || ||||| || Sbjct 31430 AATCTTCGACTTGACATTGTCAATAGTATCAGACGACTCGACCTCGAGAGTAATGGTCTT 31489 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||| ||||| Sbjct 31490 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 31519 >seq633 Length=24846 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 19941 ACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 20000 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||||||||| | || | ||||||||||| Sbjct 20001 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 20060 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 20061 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 20120 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || || || || |||||||| || Sbjct 20121 CCCGTGAGGGTTTTGACGAAAATCTGCATCTT 20152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324542197583856