Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq258 109 6e-19 seq248 109 6e-19 >seq258 Length=42171 Score = 109 bits (120), Expect = 6e-19 Identities = 219/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||||||||| || ||||| || | | | ||||| || || || |||||||| | | Sbjct 14727 CTCAAATTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGT 14668 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | | |||| || | |||| || | |||||| ||||| ||||| | || Sbjct 14667 CCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAA 14608 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | |||||| || || ||| || | ||||||||||| | Sbjct 14607 GAGGTCGCGAGCACGATTTTCTTCCTTACCGTGGTTCTTTCGCAAATCAAGAAAGTCGAA 14548 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | | |||| ||||| || ||||| || Sbjct 14547 CACGTCTGCGTGCCAAGGCTCGAGGTAGATGGCAAATGCACCAGGTCGCTTGTTACCGCC 14488 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| || | || || || || Sbjct 14487 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAATGATGCCGTTGGA 14428 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 | |||| ||||| || | ||| ||| Sbjct 14427 TGTACCGTTGGTGCCGGCAATGTAA 14403 >seq248 Length=42843 Score = 109 bits (120), Expect = 6e-19 Identities = 219/325 (67%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || ||||| || | | | ||||| || || || |||||||| | | Sbjct 23795 CTCAAACTCCTCGCCATAGCAATCAGCCAGGCCAGGGCACTCGTTGGGACACATGAGGGT 23854 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | | |||| || | |||| || | |||||| ||||| ||||| | || Sbjct 23855 CCAATCCCCGTTCTTTTCGACGCGCTTCATGAAAAGATCTGGGATCCACAGAGCAAGGAA 23914 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | |||||| ||||| ||| || | ||||||||||| | Sbjct 23915 GAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAA 23974 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | || || ||||| || || | || || || | | |||| ||||| ||||| || || Sbjct 23975 CACGTCTGCGTGCCAAGGCTCGAGGTAGATAGCAAATGCACCAGGTCGCTTATTGCCGCC 24034 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| || | || || || || Sbjct 24035 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGAAGCATGGGAATGATGCCGTTGGA 24094 Query 48425 TATACCATTGGTTCCCGAAATATAA 48449 | |||| ||||| || | ||| ||| Sbjct 24095 TGTACCGTTGGTGCCGGCAATGTAA 24119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561946477031280