Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq891 165 7e-35 seq867 158 1e-32 seq460 100 2e-15 seq39 100 2e-15 seq13 96.9 3e-14 seq727 91.5 1e-12 >seq891 Length=17630 Score = 165 bits (182), Expect = 7e-35 Identities = 466/711 (66%), Gaps = 11/711 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 12021 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 11962 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || || || ||||| | ||||| |||| ||||| || |||| | || |||||| | Sbjct 11961 CAGACTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 11902 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| ||||| ||||| || | || || | || || || Sbjct 11901 CGGGCCCGTTTCGAAGAGCTTTGTCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGAC 11842 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 11841 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 11782 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192 || || || | ||||| || || |||| | | | | || || || |||||| Sbjct 11781 GGTTCCACCCGTATTCCCCGAA-TCCAGAAA-CTCATCTCCGACTACTTTAACGGTAAAG 11724 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || ||||||||||| || || |||||||| | || || | Sbjct 11723 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTCGCGTACGGTGCCGCTGTCCAGGCTG 11664 Query 552253 CTATTCTTTCTGGACAAACT-----GATGAAAAACTACAAAATATTGTACTTGTAGATGT 552307 |||| || ||||| | ||| | | | | || |||| |||| | | || || Sbjct 11663 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACCAACGAAATCTTGT--TGCTTGACGT 11606 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 | ||| | ||||| ||| | || || | || || || ||||| || || || | | Sbjct 11605 CGCGCCTTTGTCTCTGGGTATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCTCG 11546 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 || || || ||||| || || ||| || || || || | || || || || | Sbjct 11545 TAACACAACCATTCCAACCAAGAAGTCTGAGGTTTTCTCGACCTTCTCTGACAACCAGCC 11486 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 | || ||||| | ||||| || || || | ||| || || || || | | | Sbjct 11485 CGGGGTGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTAAT 11426 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| | | || ||||| || ||||| ||||| || || || |||||||| Sbjct 11425 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGT 11366 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||| || ||| ||||||||||||| || |||||||| ||||| ||| || Sbjct 11365 TACCTTTGATCTCGATGCCAATGGTATCATGAATGTGTCTGCTGTTGAGAA 11315 Score = 143 bits (158), Expect = 2e-28 Identities = 328/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| | ||||| || |||||| ||||||||||||||| ||| | |||| || Sbjct 12772 GAAATTATCCCTAATGAGCAGGGTAACCGAACTACTCCATCTTTTGTCGCATTCAATGAC 12713 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || || ||| ||| || Sbjct 12712 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACAACACC 12653 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || |||||||| ||||| | | || | ||| || || ||||| ||| Sbjct 12652 GTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTTCGAGGATCCGGAGGTCCAGGCTGAT 12593 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||| ||| ||||| | Sbjct 12592 ATGAAGCACTTTCCCTTCAAGGTGATTGAGAAACAAGGCAAACC-TATGGTGAAGGTCGA 12534 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| ||| |||| || || ||| | | || Sbjct 12533 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCATGATCCTCATC 12476 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409 || ||| | | ||| || || || |||| || | || || | || || | | Sbjct 12475 AAGATGCGCGAGATTGCCGAGGGC--TTCTTGGGCACACCGGTCCCGAACGCTGTCGTCA 12418 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || || || ||||| || || || || ||||||| Sbjct 12417 CTGTTCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGTATTG 12358 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || |||||||| ||||| || |||||||| || || |||| ||||| | Sbjct 12357 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCAGCTATTGCTTATGGTC 12298 Query 550530 TTGATAA 550536 | || || Sbjct 12297 TCGACAA 12291 >seq867 Length=18020 Score = 158 bits (174), Expect = 1e-32 Identities = 460/702 (66%), Gaps = 11/702 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 12267 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 12208 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || || || ||||| | || || |||| ||||| || |||| | || |||||| | Sbjct 12207 CAGACTACGATTGAGATTGACTCCCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 12148 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| |||| ||||| || || || || | || || || Sbjct 12147 CGGGCCCGTTTCGAAGAGCTTTGCCAGGATCTTTTCCGATCCACCATCCAGCCTGTCGAC 12088 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| ||||| ||||| | |||||| Sbjct 12087 CGTGTTCTCACTGACGCCAAGATTGACAAATCTCAAGTTCATGAGATTGTCTTGGTTGGT 12028 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192 || || || ||||||| | || |||| | | | | || ||||| || ||| Sbjct 12027 GGTTCCACCCGAATTCCCCGTA-TCCAGAAA-CTCATCTCCGACTACTTCAACGGCAAAG 11970 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || |||||||||||||| || |||||||| | || || | Sbjct 11969 AGCCCAACAAGTCTATCAACCCTGATGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 11910 Query 552253 CTATTCTTTCTGGACAAACTGATGAAAA----ACT-ACAAAATATTGTACTTGTAGATGT 552307 |||| || ||||| | ||| | || ||| || |||| |||| | | || || Sbjct 11909 CTATCCTGTCTGGTGACACTTCTTCCAAGTCTACTAACGAAATCTTGT--TGCTTGACGT 11852 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 ||||| | ||||| ||| | || || | || || || ||||| || ||||| | Sbjct 11851 CGCTCCTTTGTCTCTGGGTATCGAGACCGCCGGTGGAATGATGACGAAGCTTATTCCCCG 11792 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 || || || ||||| || || || || || || || | ||| || || || | Sbjct 11791 TAACACAACCATTCCAACCAAGAAGTCCGAAGTTTTCTCGACCTTTTCTGACAACCAGCC 11732 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 || || || || | ||||| || || || | ||| || || || || | | Sbjct 11731 TGGGGTGCTCATCCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTGAT 11672 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | ||| | | || ||||| || ||||| ||||| || || || |||||||| Sbjct 11671 GGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATTGAAGT 11612 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||| || ||| |||| |||||||| || ||||||| |||| Sbjct 11611 TACCTTTGATCTCGACGCCAATGGTATCATGAATGTCTCTGC 11570 Score = 131 bits (144), Expect = 1e-24 Identities = 325/487 (67%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||| ||||||| || |||||| ||||||| ||||||| ||| | |||| || Sbjct 13018 GAAATTATTCCCAATGAGCAGGGTAACCGAACTACCCCATCTTTTGTCGCATTCAATGAC 12959 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||| ||||| || || |||| | | || || ||| ||| || Sbjct 12958 ACCGAGCGTCTGATTGGCGATGCTGCCAAGAATCAGGTCGCTATGAACCCTCACAACACC 12899 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || || ||||| ||||| | | || | ||| | || ||||| ||| Sbjct 12898 GTCTTCGACGCCAAGCGTTTGATTGGCCGCAAGTTCGACGATCCAGAGGTCCAGGCTGAT 12839 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||||| | | ||| | Sbjct 12838 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAAACAAGGCAAACCTT-TGGTCAAGGTCGA 12780 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| || |||| || || ||| | | || Sbjct 12779 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAGGAAATATCTTCCATGATCCTCATC 12722 Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAA 550409 || ||| | | ||| || ||||| |||| || | || || | || || | | Sbjct 12721 AAGATGCGCGAGATTGCCGAGGGCTTT--TTGGGCACACCGGTCCCGAACGCTGTCGTCA 12664 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| || || || || || ||||| || || || ||||| || || || || ||||||| Sbjct 12663 CTGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGTATTG 12604 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| || || |||||||| ||||| || |||||||| || || |||| || || | Sbjct 12603 CCGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCCTACGGTC 12544 Query 550530 TTGATAA 550536 | || || Sbjct 12543 TCGACAA 12537 >seq460 Length=31356 Score = 100 bits (110), Expect = 2e-15 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 |||||||| || || ||||||||| | || ||||| ||| || || |||||||| | || Sbjct 2393 ACTGTACCTGCCTACTTTAATGACGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 2335 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 2334 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 2275 Query 550528 ACTTGATAA 550536 ||||| || Sbjct 2274 CCTTGACAA 2266 >seq39 Length=88371 Score = 100 bits (110), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | || ||||| || || ||||| || ||| || || | Sbjct 30545 AGACGAAGCACGAGATGCAAAGTGCTTTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCG 30603 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| |||||||| || || || Sbjct 30604 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCAGGAGGGATACCCTC 30663 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| ||||| || ||| || || || ||||||| || | | ||| | | Sbjct 30664 CTTATCCTGAATCTTGGATTTGACATTGTCGATGGTATCAG-AAGATTCGACTTCCAAGG 30722 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || ||||| | || || || |||||||||||| Sbjct 30723 TAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 30763 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||| || ||| || || ||||||||| || | | ||||| Sbjct 30773 AGACGCAGGACTAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGG 30832 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || || ||||| || |||| ||||| ||||| ||||| ||||| Sbjct 30833 CCATCCTCGAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGAATGCCTTCC 30892 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 ||||||||||| || ||||| || || ||||| | | || | | ||| | || Sbjct 30893 TTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAG-GATTCAACTTCCAATGT 30951 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||| || ||||| | ||| || ||||| || |||||| Sbjct 30952 AATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 30991 >seq13 Length=129688 Score = 96.9 bits (106), Expect = 3e-14 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| || || ||||||||||||||||||| |||||| || ||||| ||||| || ||| Sbjct 70796 TCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATTCCCTCCTTA 70855 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 || ||||| || ||| || | || || ||||||| || | | ||| | || | Sbjct 70856 TCCTGAATCTTGGATTTGACAGTGTCGATGGTATCAG-AAGATTCGACTTCCAAGGTGAT 70914 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || ||||| | || || || |||||||||||| Sbjct 70915 AGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 70951 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||||||||| ||||| || ||| || |||||||| || || || || | Sbjct 71188 GAGGCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGCGAGGGTACG 71247 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| || || || || || || || | || ||||||||||||||||| ||||| Sbjct 71248 ACCATCTTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGATCAGGAGGAATACCTTC 71307 Query 563376 TTTATCTTGAATTTT 563390 ||||| ||||| || Sbjct 71308 CTTATCCTGAATCTT 71322 >seq727 Length=21899 Score = 91.5 bits (100), Expect = 1e-12 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 || ||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 11778 ACCGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 11720 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 11719 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 11660 Query 550528 ACTTGATAA 550536 || ||||| Sbjct 11659 CCTCGATAA 11651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028074262049980